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PWMs in motif collection. #47

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FelixWaern opened this issue Apr 23, 2024 · 1 comment
Open

PWMs in motif collection. #47

FelixWaern opened this issue Apr 23, 2024 · 1 comment

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@FelixWaern
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Hello!
I was wondering whether PWM is used interchangebly with PFM in the motif collections?
It says "The files named metacluster_*.cb contain position weight matrices (PWMs) for multiple motifs." in the description but certain metaclusters, for example metacluster_167.5 have motifs represented as PFMs. jaspar__MA0080.6 is the exact same as in the JASPAR database.
Thanks in advance!
@ghuls
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ghuls commented May 2, 2024

yes.

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@ghuls @FelixWaern