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32 Open 21 Closed
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Issues list

Database creation for Killifish
#53 opened Sep 11, 2024 by juhi-ku
4
> @mtxellrb A script for creating a track database from bigWig TF ChIP-seq data is now added :create_cistarget_track_databases.py
#52 opened Aug 30, 2024 by MatthewTCManion
13
The public motif collection PWMs for motifs-v9-nr
#51 opened Aug 5, 2024 by QianzhaoJ
1
Try to create the chicken cisdatabase
#50 opened Jun 26, 2024 by LJZYaaa
8
The 'zsync' files of databases file might be incorrect.
#49 opened May 9, 2024 by NirvanaCh
5
PWMs in motif collection.
#47 opened Apr 23, 2024 by FelixWaern
1
how to get the 'genes_vs_motifs.rankings.feather'
#45 opened Dec 6, 2023 by krayon4river
3
Creating a cisTarget database for Plant
#44 opened Sep 28, 2023 by wujiayi666-star
convert SCENIC+ public motif collection to HOMER format
#42 opened Aug 14, 2023 by pchiang5
1
FASTA Input to Generate SCENIC+ Databases for Rat
#41 opened Aug 13, 2023 by jonhsussman
2
build mm10 regions based databases
#40 opened Aug 8, 2023 by WGLUN
4
Creating a cisTarget database for Zebrafish
#39 opened Jul 11, 2023 by RcuIT
6
Problems encountered during the construction of the Red Eared Turtle database
#38 opened May 14, 2023 by zhongguodiyidao
4
motif2TF
#37 opened Feb 21, 2023 by Lidw2020
6
@honghh2018 You can use the mouse or human motif table and replace the gene_name column with the homologous gene for rat.
#36 opened Feb 21, 2023 by Lidw2020
What is the correct workflow for creating tracks DBs?
#35 opened Feb 2, 2023 by eboileau
7
How can I use the "genes_vs_motifs.feather" into R SCENIC
#30 opened Oct 19, 2022 by CNChunhua
Will zebrafish cisTarget databases be available in the future?
#26 opened Sep 19, 2022 by yjchen1201
9
How to deal with genes or regions in human unmapped in other species by liftover
#25 opened Aug 28, 2022 by yangliu0729
1
How to check which genes are in the database?
#24 opened Aug 25, 2022 by linxy29
4
Can I use this method to create a cisTarget database for plant?
#22 opened May 24, 2022 by cheer1104
1
Can I apply cisTarget to estimate the RBP-regulon?
#20 opened Mar 20, 2022 by kerenzhou062
6
Can the input motifs be in the PWM format?
#19 opened Mar 20, 2022 by kerenzhou062
3
Use tracks
#17 opened Feb 7, 2022 by mtxellrb
5
pig cisTarget database issues!
#16 opened Jan 10, 2022 by Samaneh14
15
ProTip! Follow long discussions with comments:>50.