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Bug Report: OutOfMemoryError (“GC overhead limit exceeded”) when running topic modeling with Mallet

Status: Open.

#213 In aertslab/pycisTopic;

· teng-gao opened on Jul 25, 2025

Guidance on V3 branch

Status: Open.

#212 In aertslab/pycisTopic;

· jjia1 opened on Jul 24, 2025

Bug report [BUG] - pycisTopic QC

Status: Open.

#210 In aertslab/pycisTopic;

· TheeJonas opened on Jun 19, 2025

KeyError in cell_topic_heatmap [BUG]

Status: Open.

#209 In aertslab/pycisTopic;

· daniel-nebdal opened on May 26, 2025

Error in topic binarization after topic modeling with polars_1xx branch

Status: Open.

#206 In aertslab/pycisTopic;

· Sebdumas opened on Mar 17, 2025

High Memory Consumption During QC Process

Status: Open.

#198 In aertslab/pycisTopic;

· Keep-Raining opened on Dec 31, 2024

Problem installing polars_1xx branch, possible issue through pybigtools [BUG]

Status: Open.

#197 In aertslab/pycisTopic;

· ckv2115147 opened on Dec 30, 2024

pycisTopic find_diff_features function stopping abruptly at Starting a local Ray instance

Status: Open.

#195 In aertslab/pycisTopic;

· ptk1601 opened on Dec 3, 2024

Bug report [BUG] about tutorial

Status: Open.

#186 In aertslab/pycisTopic;

· Keep-Raining opened on Nov 5, 2024

fail to run AUCell_direct due to memory.

Status: Open.

#184 In aertslab/pycisTopic;

· JinKyu-Cheong opened on Nov 1, 2024

Add pycisTopic images to DockerHub

Status: Open.

#182 In aertslab/pycisTopic;

· massonix opened on Oct 28, 2024

1Tb memory is insufficient for normalize_scores

Status: Open.

#179 In aertslab/pycisTopic;

· JinKyu-Cheong opened on Oct 19, 2024