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139 Open 230 Closed
139 Open 230 Closed
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Issues list

Question about .feather output of create_cistarget_motif_databases.py
#550 opened Feb 27, 2025 by sknaack
1
How to find the motif name corresponding to TFs_direct_+/+(10g) such as ARID5B_direct+/+_(10g) in SCENIC+ 1.0a2?
#549 opened Feb 27, 2025 by fenghuijian
1
heatmap_dotplot errors when subsetting features
#547 opened Feb 26, 2025 by jklvrt
error in biomart connection
#544 opened Feb 17, 2025 by AdotaLover
1
Error in Prepare fasta from consensus regions
#543 opened Feb 16, 2025 by AdotaLover
how to use new compute_qc_stats()
#542 opened Feb 14, 2025 by AdotaLover
1
Installation issues on AWS EC2
#541 opened Feb 12, 2025 by khanthanan
2
Installation issues
#540 opened Feb 9, 2025 by angelica-varesi
8
motif_enrichement_step issue
#539 opened Feb 3, 2025 by WanyingX
Question on how to interpret the "Distance" column in search_space.tsv
#537 opened Jan 25, 2025 by zhli12
Issue with running scenicplus grn_inference eGRN
#532 opened Jan 14, 2025 by zhli12
2
Scalability issues: Timeout error for large data set snakemake pipeline
#529 opened Jan 6, 2025 by jolvhull
13
region-based AUC values are all zero / GSEA warnings
#527 opened Dec 16, 2024 by cosmiccapybara
3
different TFs are discovered from different cistarget databases
#526 opened Dec 15, 2024 by gilgolan73
8
TypeError: unbound method set.union() needs an argument
#525 opened Dec 13, 2024 by Melody-cell
11
Help with bc_transform_func for GEX job in Snakemake
#522 opened Dec 5, 2024 by ptk1601
4
Help with error when running scenicplus tutorial using snakemake in the step score_regions_to_single_gene
#519 opened Dec 2, 2024 by zhli12
Many bugs in different packages compatibility in the previous version and building failed in the new version
#518 opened Dec 1, 2024 by idkaavan
1
Documentation Link Broken in FAQs 2
#515 opened Nov 28, 2024 by ziquangan
1
issue about install SCENIC+ in environment
#514 opened Nov 26, 2024 by Xinlei672
1
Error with plot-related functions when running pycisTopic
#512 opened Nov 23, 2024 by zhli12
6
Running Scenic+ without Snakemake
#510 opened Nov 18, 2024 by gilgolan73
1
کتابخانه scenicplus نصب نمیشه یک ماهه تلاش میکنم حتی در محیط مجازی کوندا نیز نصب نمیشه ارور زیر رو میده لطفا کری کنید بشه کتابخانه رو نصب کرد
#507 opened Nov 17, 2024 by sajadfatahi
2
کتابخانه نصب نمیشه یک ماهه تلاش میکنم حتی در محیط مجازی کوندا نیز نصب نمیشه
#506 opened Nov 17, 2024 by sajadfatahi
1
Error in running cell_topic_heatmap
#501 opened Nov 7, 2024 by realmungmung
1
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