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Converting mudata output to old-style SCENIC+ object. but get_interaction_pr() doesn't work

Status: Open.

#592 In aertslab/scenicplus;

· Weiming113 opened on Jul 31, 2025

Tutorial links not working

Status: Open.

#591 In aertslab/scenicplus;

· alifarhat40 opened on Jul 28, 2025

snakemake Runing - SCENIC+ step

Status: Open.

#590 In aertslab/scenicplus;

· Amir-Sarguos opened on Jul 28, 2025

Custom Species Annotation

Status: Open.

#587 In aertslab/scenicplus;

· hechristopher opened on Jul 9, 2025

Scenic installation

Status: Open.

#586 In aertslab/scenicplus;

· aliciaavis opened on Jul 9, 2025

Issue with reproducibility of results

Status: Open.

#585 In aertslab/scenicplus;

· Josh-Gertsvolf opened on Jul 2, 2025

scenicplus prepare_data download_genome_annotations fails with HTTP 404 on Ensembl BioMart registry lookup

Status: Open.

#584 In aertslab/scenicplus;

· teng-gao opened on Jun 29, 2025

No Motif Enrichment Output from pycisTarget Despite Valid Region Sets

Status: Open.

#583 In aertslab/scenicplus;

· AtiehAbedin opened on Jun 25, 2025

pycisTopic QC bug:: polars.exceptions.ColumnNotFoundError: CB

Status: Open.

#578 In aertslab/scenicplus;

· ShiyuBai-git opened on Jun 4, 2025

Issue running snakemake with cistarget database created by myself and get ValueError: Length mismatch: Expected axis has 0 elements, new values have 3 elements

Status: Open.

#577 In aertslab/scenicplus;

· CZHanoi opened on Jun 3, 2025

The create_nx_tables seems to in-place modify the scplus_obj X_EXP field inside the _get_log2fc_nx function

Status: Open.

#576 In aertslab/scenicplus;

· danielee0707 opened on May 26, 2025

Prepare menr error

Status: Open.

#575 In aertslab/scenicplus;

· olajucha opened on May 23, 2025