- data preparation:
- original data were merged & normalized in
R/0_prep_data.R
- original data were merged & normalized in
- model training:
- elastic-net classifier was trained by running
R/main_elastic_net.R - conditional independence network was estimated by running
R/main_network.R
- elastic-net classifier was trained by running
- visualization:
- visualization of model outputs & related analyses were done using
R/visual_elastic_net.RandR/visual_network_ggraph.R - output figures are under
outs/*.pdf
- visualization of model outputs & related analyses were done using
-
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scripts of integrative machine learning for the covhic001 paper
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