Version 2.0

Major release of GDSC SMLM.

• Update to GDSC Core 2.2

• Update the Residence Time Analysis plugin to allow filtering of the counts histogram to remove long residence times.

• Update the tracing algorithm used by the Trace Molecules plugin. This now performs tracing of localisations to existing tracks using the end time of the track only (i.e. its last known position).

  This corrects a bug in tracing using time thresholds above 1 where jump distances between adjacent localisations could be above the distance threshold if a localisation was matched to a prior position of the track. E.g. Given a track with localisations A and B, a new localisation C will only be compared to position B; the previous algorithm allowed comparison to A and B.

  The use of the exclusion distance has been updated to apply a stricter exclusion using all possible matches across the entire time distance. Previously this was applied using alternative matches in the same frame only.

• Update the interactive results table to allow a source image to be attached to the results. The results can be added to the source image as an overlay.

• Added the Trace Viewer plugin to display a table of traced results.

• Update from Commons Math to Commons Statistics for inference testing and univariate descriptive statistics.

• Change use of EJML API from 0.24 to 0.41 (change mandated by scijava-pom for ImageJ compatibility). This is binary incompatible change to the public API.

• Change use of java3d API from 4.x to 5.x (change mandated by scijava-pom for ImageJ compatibility). This is binary incompatible change to the public API.

• Add Use stack option to Overlay Image.

• Remove deprecated code.

Full Changelog: v1.1...v2.0

Version 1.1

Minor release of GDSC SMLM.

• Update to GDSC Core 2.1
• Fix the Trace Diffusion plugin to use descending diffusion coefficients for multi-population models. This corrects selection of the model using the minimum relative difference between successive coefficients.
• Added the Residence Time Analysis plugin to fit residence times of stationary (bound) molecules.
• Fix the Save Localisations plugin error when the PSF is undefined.
• Update the TIFF Series Viewer plugin with a Validate output mode.
• Update the View a camera model action in the Camera Model Manager plugin. Allow display of histograms of the model pixel data; and outlier pixels.
• Fix the Fit Configuration plugin to allow templates with a sCMOS camera.
• Added Trace Molecules (Multi) to support multiple dataset analysis.

Version 1.0.2

Patch release of GDSC SMLM.

• Update to GDSC Core 2.0.2

Version 1.0.1

Patch release of GDSC SMLM.

• Correct application of templates with PSF settings.

Version 1.0

Initial public release