Version 0.3.2

• Fix parse_composite_info to work with older composite images that are missing ImageDescription (akoyabio/phenoptrReports#52)
• Correctly parse phenotype expressions containing slashes (#18)
• Tighten up the column exclusion criteria for read_cell_seg_data with col_select="phenoptrReports" (#16)
• Update tests to work with testthat 3.1.

Version 0.3.1

• Add read_composites and read_composite_info to read and parse
  metadata in inForm composite images.

Version 0.3.0

Misc:

• Update dependencies to modern versions
• Fix for bug in readr 2.0.0

Version 0.2.10

Changes to read_cell_seg_data:

• Add a col_select parameter to support reading only
  selected fields, with a 'phenoptrReports' option to read only fields
  needed by phenoptrReports.
• Use vroom::vroom() instead of readr::read_tsv for speed and support
  of col_select.
• For an export file containing all inForm fields,
  read_cell_seg_data(csd_path, col_select='phenoptrReports') can be
  4-5x faster and use 75% less memory for the results,
  compared to the previous version.

Spatial distribution report:

• Fix report generation to work when paths contain spaces.

Misc:

• Fix select_rows to always return FALSE instead of NA.
• Update to work with CRAN release of tiff 0.1-8
• Update to work with (and require) spatstat 2.0.0
• Require R 4.0.0 or greater for compatibility with latest rtree

Version 0.2.9

• Improved the way read_cell_seg_data determines column types to prevent errors in some edge cases.
• Fixed make_ppp to work correctly when given compound phenotypes such as "CD8+/PD-L1+"

Version 0.2.8

• Add make_ppp function to create marked point patterns.
• parse_phenotypes makes nicer names for expression-based phenotypes.
• Add phenotype_columns in support of akoyabio/phenoptrReports#36.
• Add read_field_info and get_map_path functions.

Version 0.2.7

Fix for dplyr 1.0.0

Version 0.2.6

• Avoid deprecation warning for expand_scale with ggplot2 version 3.3.0

phenoptr 0.2.5

2020-02-28

• Make read_cell_data more robust against data with comma as the decimal separator.
• Better documentation and error messages in count_touching_cells_fast.

Version 0.2.4

• Add count_touching_cells_fast for phenoptrReports spatial map viewer.
• Don't return NA values from select_rows(); return FALSE instead.
• Now requires tidyr >= 1.0.0.

Version 0.2.3

Add annotation_raster_native for faster plotting with background images.