Update to version 0.1.3, rebuild docs.

akoyabio · Nov 5, 2018 · 23f6626 · 23f6626
1 parent e76d116
commit 23f6626
Show file tree

Hide file tree

Showing 52 changed files with 961 additions and 121 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: phenoptrReports
 Title: Create reports using Phenoptics data
-Version: 0.1.2.9000
-Date: 2018-10-31
+Version: 0.1.3
+Date: 2018-11-05
 Authors@R: c(
     person("Kent S", "Johnson", role = c("aut", "cre"),
            email = "[email protected]"),

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,5 @@
-# phenoptrReports 0.1.2.9000
+# phenoptrReports 0.1.3
+**2018-11-05**
 
 New features:
 - New RStudio Addin - "Merge cell seg files" merges inForm output from 

diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -40,14 +40,16 @@ reference:
     desc: These functions are added to the RStudio Addins menu. Selecting
           one opens a GUI.
     contents:
-      - '`analysis_app`'
       - '`merge_addin`'
+      - '`consolidate_addin`'
+      - '`analysis_app`'
       - '`unmixing_quality_addin`'
-  - title: Consolidation
-    desc: These functions implement the consolidation step.
+  - title: Merging and Consolidation
+    desc: These functions implement the merge and consolidation apps.
     contents:
-      - '`merge_and_split_cell_seg_data`'
-      - '`merge_and_summarize_cell_seg_data`'
+      - '`merge_cell_seg_files`'
+      - '`consolidate_and_split_cell_seg_data`'
+      - '`consolidate_and_summarize_cell_seg_data`'
   - title: Calculations
     desc: These functions perform the calculations for an analysis.
     contents:

diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/articles/analysis.html b/docs/articles/analysis.html
diff --git a/docs/articles/consolidation.html b/docs/articles/consolidation.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/unmixing_quality_report.html b/docs/articles/unmixing_quality_report.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/reference/add_tissue_category_totals.html b/docs/reference/add_tissue_category_totals.html
diff --git a/docs/reference/analysis_app.html b/docs/reference/analysis_app.html
diff --git a/docs/reference/check_phenotypes.html b/docs/reference/check_phenotypes.html
diff --git a/docs/reference/compute_density_from_cell_summary.html b/docs/reference/compute_density_from_cell_summary.html
diff --git a/docs/reference/compute_density_from_table.html b/docs/reference/compute_density_from_table.html
diff --git a/docs/reference/compute_h_score.html b/docs/reference/compute_h_score.html
diff --git a/docs/reference/compute_h_score_from_score_data.html b/docs/reference/compute_h_score_from_score_data.html
diff --git a/docs/reference/compute_mean_expression.html b/docs/reference/compute_mean_expression.html
diff --git a/docs/reference/compute_mean_expression_many.html b/docs/reference/compute_mean_expression_many.html