Bump version to 0.2.4 and rebuild docs for release, with a few minor …

…doc fixups.
akoyabio · Aug 7, 2019 · 787ff62 · 787ff62
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: phenoptrReports
 Title: Create reports using Phenoptics data
-Version: 0.2.3.9000
-Date: 2019-07-02
+Version: 0.2.4
+Date: 2019-08-07
 Authors@R: c(
     person("Kent S", "Johnson", role = c("aut", "cre"),
            email = "[email protected]"),
@@ -25,7 +25,7 @@ Imports:
     magrittr,
     miniUI (>= 0.1.1),
     openxlsx,
-    phenoptr (> 0.2.2),
+    phenoptr (>= 0.2.3),
     png,
     purrr,
     RColorBrewer,

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,5 @@
-# phenoptrReports 0.2.3.9000
+# phenoptrReports 0.2.4
+**2019-08-07**
 
 Spatial map viewer improvements:
 - Dramatic improvement in time to render the charts, especially with 2x2 fields.

diff --git a/R/spatial_map_viewer_addin.R b/R/spatial_map_viewer_addin.R
@@ -45,7 +45,7 @@ spatial_map_viewer = function(csd_path, export_path) {
 }
 
 
-#' Request input file and directory for the viewer, then launch the viewer
+# Request input file and directory for the viewer, then launch the viewer
 spatial_map_viewer_front_end = function() {
   intro <- shiny::tagList(shiny::p(
       'This app provides a field-based viewer',

diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -35,6 +35,7 @@ articles:
     contents:
     - consolidation
     - analysis
+    - spatial_map_viewer
     - unmixing_quality_report
 
 reference:
@@ -92,7 +93,7 @@ reference:
   - title: Helper functions
     contents:
       - choose_directory
-      - choose_file
+      - choose_files
       - nearest_neighbor_map
       - order_by_slide_and_tissue_category
       - spatial_map_viewer

diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/articles/analysis.html b/docs/articles/analysis.html
diff --git a/docs/articles/consolidation.html b/docs/articles/consolidation.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/spatial_map_viewer.html b/docs/articles/spatial_map_viewer.html
diff --git a/docs/articles/unmixing_quality_report.html b/docs/articles/unmixing_quality_report.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -1,4 +1,4 @@
-pandoc: '2.6'
+pandoc: 2.7.3
 pkgdown: 1.3.0
 pkgdown_sha: ~
 articles:

diff --git a/docs/reference/addin_10_merge.html b/docs/reference/addin_10_merge.html
diff --git a/docs/reference/addin_20_consolidate.html b/docs/reference/addin_20_consolidate.html
diff --git a/docs/reference/addin_30_analysis_app.html b/docs/reference/addin_30_analysis_app.html
diff --git a/docs/reference/addin_35_spatial_map_viewer.html b/docs/reference/addin_35_spatial_map_viewer.html
diff --git a/docs/reference/addin_40_unmixing_quality.html b/docs/reference/addin_40_unmixing_quality.html
diff --git a/docs/reference/addin_50_component_levels.html b/docs/reference/addin_50_component_levels.html
diff --git a/docs/reference/choose_directory.html b/docs/reference/choose_directory.html
diff --git a/docs/reference/choose_files.html b/docs/reference/choose_files.html
diff --git a/docs/reference/component_levels_report.html b/docs/reference/component_levels_report.html
diff --git a/docs/reference/compute_density_from_cell_summary.html b/docs/reference/compute_density_from_cell_summary.html
diff --git a/docs/reference/compute_density_from_table.html b/docs/reference/compute_density_from_table.html
diff --git a/docs/reference/compute_h_score.html b/docs/reference/compute_h_score.html
diff --git a/docs/reference/compute_h_score_from_score_data.html b/docs/reference/compute_h_score_from_score_data.html
diff --git a/docs/reference/compute_mean_expression.html b/docs/reference/compute_mean_expression.html
diff --git a/docs/reference/compute_mean_expression_many.html b/docs/reference/compute_mean_expression_many.html