GitHub - alexandergz1983/inversions_GC_skew_Hp: Genomic inversions in Helicobacter pylori are maintained over extensive evolutionary timescales, thereby enhancing both the evolution and virulence of the species

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Genomic inversions in Helicobacter pylori are maintained over extensive evolutionary timescales, thereby enhancing both the evolution and virulence of the species

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Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
0_prokka.py		0_prokka.py
10_filter_core_genome_from_gene_presence_absence_panaroo.py		10_filter_core_genome_from_gene_presence_absence_panaroo.py
11_process_core_clusters_updated.py		11_process_core_clusters_updated.py
12_megacc_dnds_v2.py		12_megacc_dnds_v2.py
13_ statistics4.ipynb		13_ statistics4.ipynb
14_proportionG_C_CDHO.ipynb		14_proportionG_C_CDHO.ipynb
15_filtered_VPI_core.ipynb		15_filtered_VPI_core.ipynb
1_gc_skew.py		1_gc_skew.py
2_gbff2mochi_basename.py		2_gbff2mochi_basename.py
3_mochi2mochiHOCD.py		3_mochi2mochiHOCD.py
4_GCskew_v7_modified.py		4_GCskew_v7_modified.py
5_mochi_statistic1F.py		5_mochi_statistic1F.py
6_mochi_statistics2F.py		6_mochi_statistics2F.py
7_mochi_statistics3F.py		7_mochi_statistics3F.py
8_z_score1.py		8_z_score1.py
9_z_score2.py		9_z_score2.py
Table_S1.xlsx		Table_S1.xlsx
Table_S2.xlsx		Table_S2.xlsx
Table_S3.xlsx		Table_S3.xlsx
Table_S4.xlsx		Table_S4.xlsx
Table_S5.xlsx		Table_S5.xlsx
distance_estimation_overall_mean_Non_syn-nonsynonymous.mao		distance_estimation_overall_mean_Non_syn-nonsynonymous.mao
distance_estimation_overall_mean_Syn_syn-nonsynonymous.mao		distance_estimation_overall_mean_Syn_syn-nonsynonymous.mao

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Genomic inversions in Helicobacter pylori are maintained over extensive evolutionary timescales, thereby enhancing both the evolution and virulence of the species