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Failed to read sequence from compressed file (gzip/bgzf) in 0.12.0

bugSomething isn't workingSomething isn't working

Status: Open.

#97 In althonos/pyhmmer;

· chtsai0105 opened on Jan 27, 2026

Question about extract columns from hmmsearch domain output

questionFurther information is requestedFurther information is requested

Status: Open.

#82 In althonos/pyhmmer;

· Xinpeng021001 opened on Dec 19, 2024

Running the hmmsearch

questionFurther information is requestedFurther information is requested

Status: Open.

#79 In althonos/pyhmmer;

· SergeyBaikal opened on Oct 14, 2024

Parameter to remove insert column in <code>hmmalign</code>

enhancementNew feature or requestNew feature or request

Status: Open.

#74 In althonos/pyhmmer;

· apcamargo opened on Aug 16, 2024

Return a single TopHits object when passing a single hmm to hmmsearch

enhancementNew feature or requestNew feature or request

questionFurther information is requestedFurther information is requested

Status: Open.

#73 In althonos/pyhmmer;

· alex-hh opened on Aug 16, 2024

BUG: <code>plan7.HMM.validate()</code> fails to raise exceptions with ill formatted hmm profiles

bugSomething isn't workingSomething isn't working

externalIssue comes from a dependency or some external code.Issue comes from a dependency or some external code.

Status: Open.

#69 In althonos/pyhmmer;

· Sann5 opened on May 31, 2024

Apply cutoffs for domains

bugSomething isn't workingSomething isn't working

questionFurther information is requestedFurther information is requested

Status: Open.

#65 In althonos/pyhmmer;

· apcamargo opened on Apr 7, 2024

Guess bit_cutoffs in hmmsearch

enhancementNew feature or requestNew feature or request

Status: Open.

#64 In althonos/pyhmmer;

· jpjarnoux opened on Mar 29, 2024

cannot reproduce example for <code>pyhmmer.hmmer.hmmsearch</code>

questionFurther information is requestedFurther information is requested

Status: Open.

#58 In althonos/pyhmmer;

· erfanshekarriz opened on Dec 9, 2023

Production stable or WIP

questionFurther information is requestedFurther information is requested

Status: Open.

#45 In althonos/pyhmmer;

· oschwengers opened on Jun 27, 2023

Possibility to filter alignment results on coverage between HMM and target

questionFurther information is requestedFurther information is requested

Status: Open.

#27 In althonos/pyhmmer;

· jpjarnoux opened on Nov 28, 2022

zip argument #1 must support iteration error + other question

questionFurther information is requestedFurther information is requested

Status: Open.

#17 In althonos/pyhmmer;

· willhuynh11 opened on Apr 18, 2022