Fix amusifier Python 3.13 compatibility #236
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: ci | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| mpi: | |
| - mpich | |
| - openmpi | |
| os: | |
| # - ubuntu-22.04 | |
| - ubuntu-20.04 | |
| # macOS is not ready yet - needs other setup of prerequisites | |
| # - macos-12 | |
| # - macos-11 | |
| python: | |
| - 3.7 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup MPI | |
| id: setup-mpi | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: ${{ matrix.mpi }} | |
| - name: Show MPI name | |
| run: echo "${{ steps.setup-mpi.outputs.mpi }}" | |
| - name: Show MPI info | |
| run: mpichversion | |
| if: ${{ matrix.mpi == 'mpich' }} | |
| - name: Show MPI info | |
| run: ompi_info | |
| if: ${{ matrix.mpi == 'openmpi' }} | |
| - name: Set up JDK 1.8 | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'zulu' # See 'Supported distributions' for available options | |
| java-version: '17' | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| cache: 'pip' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| sudo apt-get install gfortran libopenblas-dev libhdf5-openmpi-dev libgsl0-dev cmake libfftw3-3 libfftw3-dev libmpfr6 libmpfr-dev | |
| pip install numpy scipy matplotlib docutils mpi4py pytest pytest-timeout | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Install amuse | |
| run: | | |
| pip install -e . | |
| ./configure | |
| - name: build AMUSE framework | |
| run: | | |
| make framework | |
| - name: build SSE and BHTree | |
| run: | | |
| make sse.code bhtree.code | |
| - name: check installation | |
| run: | | |
| amusifier --get-amuse-configmk | |
| pip list | |
| - name: move build log | |
| run: | | |
| mv build.log build-${{ matrix.mpi }}-${{ matrix.python }}.log | |
| - name: archive build log | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: buildlog-${{ matrix.mpi }}-${{ matrix.python }} | |
| path: build-${{ matrix.mpi }}-${{ matrix.python }}.log | |
| - name: test core_tests | |
| run: | | |
| pytest --pyargs amuse.test.suite.core_tests -s | |
| - name: test compile_tests | |
| run: | | |
| ip link show | |
| echo $OMPI_MCA_btl_tcp_if_include | |
| pytest -k "not test29" --pyargs amuse.test.suite.compile_tests.test_c_implementation -sv | |
| env: | |
| OMPI_MCA_rmaps_base_oversubscribe: 1 | |
| OMPI_MCA_btl_tcp_if_include: lo | |
| - name: test code_tests | |
| run: | | |
| mpiexec -n 1 pytest --pyargs amuse.test.suite.codes_tests.test_bhtree -sv | |
| mpiexec -n 1 pytest --pyargs amuse.test.suite.codes_tests.test_sse -sv | |
| env: | |
| OMPI_MCA_rmaps_base_oversubscribe: 1 | |
| OMPI_MCA_btl_tcp_if_include: lo | |
| OMPI_MCA_pmix_server_max_wait: 10 |