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Andersen Laboratory @ Scripps Research

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  1. HCoV-19-Genomics HCoV-19-Genomics Public

    SARS-CoV-2 genomics

    15 5

  2. ivar ivar Public

    Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    C++ 120 42

  3. Freyja Freyja Public

    Depth-weighted De-Mixing

    HTML 113 33

  4. avian-influenza avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    Shell 31 8

  5. MPXV_wastewater_sequencing MPXV_wastewater_sequencing Public

    Python 1

Repositories

Showing 10 of 59 repositories
  • ivar Public Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    andersen-lab/ivar’s past year of commit activity
    C++ 120 GPL-3.0 44 39 9 Updated Apr 16, 2025
  • Freyja-SRA Public
    andersen-lab/Freyja-SRA’s past year of commit activity
    Python 4 GPL-3.0 4 0 0 Updated Apr 16, 2025
  • flusra_dvg Public Forked from andersen-lab/flusra
    andersen-lab/flusra_dvg’s past year of commit activity
    Nextflow 0 4 0 0 Updated Apr 16, 2025
  • avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    andersen-lab/avian-influenza’s past year of commit activity
    Shell 31 8 2 0 Updated Apr 15, 2025
  • flusra Public
    andersen-lab/flusra’s past year of commit activity
    Nextflow 3 4 1 0 Updated Apr 14, 2025
  • Freyja-nf Public Forked from andersen-lab/Freyja-SRA

    nextflow pipeline for NICD wastewater surveillance

    andersen-lab/Freyja-nf’s past year of commit activity
    Nextflow 0 GPL-3.0 4 0 0 Updated Apr 13, 2025
  • Freyja-data Public

    Previous versions of Freyja barcodes and metadata files

    andersen-lab/Freyja-data’s past year of commit activity
    Python 4 0 0 0 Updated Apr 11, 2025
  • Freyja Public

    Depth-weighted De-Mixing

    andersen-lab/Freyja’s past year of commit activity
    HTML 113 BSD-2-Clause 33 7 0 Updated Apr 10, 2025
  • HCoV-19-Genomics Public

    SARS-CoV-2 genomics

    andersen-lab/HCoV-19-Genomics’s past year of commit activity
    15 5 2 0 Updated Apr 9, 2025
  • Bygul Public

    Amplicon read simulator

    andersen-lab/Bygul’s past year of commit activity
    Python 1 0 0 0 Updated Apr 7, 2025
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