PET Pipelines Tests #105
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: PET Pipelines Tests | |
| on: | |
| schedule: | |
| - cron: 0 20 * * 3 # every Wednesday at 8pm | |
| permissions: | |
| contents: read | |
| jobs: | |
| # test-pipelines-pet-MacOS: | |
| # runs-on: | |
| # - self-hosted | |
| # - macOS | |
| # timeout-minutes: 720 | |
| # steps: | |
| # - uses: actions/checkout@v5 | |
| # - name: Run tests for pet pipelines | |
| # run: | | |
| # make env.conda | |
| # source ~/miniconda3/etc/profile.d/conda.sh | |
| # conda activate "${{ github.workspace }}"/env | |
| # source "$(brew --prefix)/opt/modules/init/bash" | |
| # module load clinica.all | |
| # make install | |
| # cd test | |
| # poetry run pytest --verbose \ | |
| # --working_directory=/Volumes/data/working_dir_mac \ | |
| # --input_data_directory=/Volumes/data_ci \ | |
| # --basetemp=/Volumes/data/tmp \ | |
| # --junitxml=./test-reports/non_regression_pet_mac.xml \ | |
| # --disable-warnings \ | |
| # ./nonregression/pipelines/pet | |
| test-pipelines-pet-Linux: | |
| runs-on: | |
| - self-hosted | |
| - Linux | |
| - test-runner | |
| timeout-minutes: 720 | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - name: Run tests for pet pipelines | |
| run: | | |
| make env.conda | |
| source /builds/miniconda/etc/profile.d/conda.sh | |
| conda activate "${{ github.workspace }}"/env | |
| source /usr/local/Modules/init/profile.sh | |
| module load clinica.all | |
| make install | |
| cd test | |
| poetry run pytest --verbose \ | |
| --working_directory=/mnt/data/ci/working_dir_linux \ | |
| --input_data_directory=/mnt/data_ci \ | |
| --basetemp=/mnt/data/ci/tmp \ | |
| --junitxml=./test-reports/non_regression_pet_linux.xml \ | |
| --disable-warnings \ | |
| ./nonregression/pipelines/pet |