Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Porting barebone-studio nodes #364

Merged
merged 6 commits into from
Jan 20, 2025

Conversation

itutu-tienday
Copy link
Collaborator

@itutu-tienday itutu-tienday commented Jan 16, 2025

Porting each workflow nodes available in optinist(barebone-studio) to optinist-for-server.

Porting target nodes

  • Data
    • image, csv, hdf5, flou, behavior, matlab
  • Algorithm
    • caiman, suite2p, lccd, optinist

*See screenshots

for-server_barebone_porting-nodes

Testcase

  • Test for Porting Nodes

    • Run Workflow
      • Tutorial1 (suite2p+α)
      • Tutorial2 (caiman+α)
  • Test for Original Nodes

    • Run Workflow
      • Preprocessing (microscpoe -> preprocessing -> caiman_cnmf_preprocessing)
      • Preset (preprocessed_data -> analyze_stats)
    • Run Analyze Batch
      • Run Batch (python run_expdb_batch.py)
  • Test for Records

    • Reproduce & Run Old Experiments

@itutu-tienday itutu-tienday marked this pull request as ready for review January 20, 2025 08:29
@itutu-tienday itutu-tienday linked an issue Jan 20, 2025 that may be closed by this pull request
3 tasks
K: 10

gSig: [4, 4]
ssub: 1
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

setting ssub: 2 would also be faster

Copy link
Collaborator Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Thank you.
This setting is inherited from the original code (MATLAB), so I will keep it as it is.
It would be a good idea to discuss the optimization of the settings with the user separately.

@itutu-tienday itutu-tienday merged commit a3de121 into develop-main Jan 20, 2025
5 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

[TO][No.12]Porting wrapper functions in optinist
2 participants