aristoteleo · github-actions · Jul 6, 2025
diff --git a/README.md b/README.md
@@ -46,6 +46,7 @@ This repository, autonomously updated daily by our **Pantheon** agent system, co
 - [2025.03 Preprint] [IAN: An Intelligent System for Omics Data Analysis and Discovery](https://www.biorxiv.org/content/10.1101/2025.03.06.640921v1)
 - [2025.03 Preprint] [PharmAgents: Building a Virtual Pharma with Large Language Model Agents](https://arxiv.org/abs/2503.22164)
 - [2025.03 Preprint] [CompBioAgent: An LLM-powered agent for single-cell RNA-seq data exploration](https://www.biorxiv.org/content/10.1101/2025.03.17.643771v1)
+- [2025.03 Preprint] [A novel LLM-based framework for drug discovery and personalized medicine](https://www.biorxiv.org/content/10.1101/2025.03.11.642548v1)
 
 ## Benchmarks
 
@@ -75,4 +76,4 @@ This repository, autonomously updated daily by our **Pantheon** agent system, co
 - [2024.09 Artificial Intelligence Review] [Large language models in medical and healthcare fields: applications, advances, and challenges](https://link.springer.com/article/10.1007/s10462-024-10921-0)
 - [2024.12 Nature Cancer] [How AI agents will change cancer research and oncology](https://www.nature.com/articles/s43018-024-00861-7)
 - [2025.02 The Lancet] [The rise of agentic AI teammates in medicine](https://www.thelancet.com/journals/lancet/article/PIIS0140-6736(25)00202-8/abstract)
-- [2025.03 Trends in Biotechnology] [Large language model for knowledge synthesis and AI-enhanced biomanufacturing](https://www.cell.com/trends/biotechnology/fulltext/S0167-7799(25)00045-9#:~:text=LLMs%20empower%20metabolic%20models%20to,gain%20new%20insights%20and%20predictions)
+- [2025.03 Trends in Biotechnology] [Large language model for knowledge synthesis and AI-enhanced biomanufacturing](https://www.cell.com/trends/biotechnology/fulltext/S0167-7799(25)00045-9#:~:text=LLMs%20empower%20metabolic%20models%20to,gain%20new%20insights%20and%20predictions)
diff --git a/daily_reports/2025-07-06.md b/daily_reports/2025-07-06.md
@@ -0,0 +1,75 @@
+# The Applications of LLM-Based Agents in Biology and Medicine
+
+This markdown document summarizes recent research examining the various applications of large language model (LLM)-based agents within the fields of biology and medicine. The studies illustrate how these advanced AI technologies are transforming research, diagnostics, and therapeutic practices.
+
+## Key Papers
+
+- **[The role of Language Models in Biomedical Research](https://arxiv.org/abs/2503.00096)**  
+  Discusses the utilization of LLMs in biomedical research, highlighting applications such as data annotation and patient care.  
+  *Published: March 2025* - *Journal: arXiv*
+
+- **[A novel LLM-based framework for drug discovery and personalized medicine](https://www.biorxiv.org/content/10.1101/2025.03.11.642548v1)**  
+  Presents a framework for drug discovery utilizing LLMs to generate hypotheses and analyze biological data.  
+  *Published: 2025* - *Journal: bioRxiv*
+
+- **[Transforming Common Practice In Therapeutics with Artificial Intelligence and Natural Language Processing Technologies](https://pmc.ncbi.nlm.nih.gov/articles/PMC8432320/)**  
+  Discusses the impact of AI and NLP technologies on therapeutic practices to improve patient care.  
+  *Published: 2021* - *Journal: Frontiers in Pharmacology*
+
+- **[Leveraging large language models for systematic review in genetics research: a case study](https://www.nature.com/articles/s10038-024-01231-y)**  
+  Explores the application of LLMs in enhancing the systematic review process in genetics.  
+  *Published: 2024* - *Journal: Journal of Human Genetics*
+
+- **[LLM-based BERT-Well: A Novel Framework for Biomedical Text Mining](https://link.springer.com/article/10.1007/s10462-024-10921-0)**  
+  Discusses LLM-based BERT-Well for enhancing biomedical text mining tasks.  
+  *Published: 2024* - *Journal: Artificial Intelligence Review*
+
+- **[Lifelong Learning Unveils the Cost of Meaningful Interpretability in Large Language Models](https://arxiv.org/abs/2310.05694)**  
+  Examines the challenges of interpretability in LLMs concerning their application in healthcare.  
+  *Published: October 2023* - *Journal: arXiv*
+
+- **[Application of artificial intelligence to improve medication adherence](https://onlinelibrary.wiley.com/doi/10.1002/hcs2.61)**  
+  Integrates AI technologies to enhance medication adherence among patients.  
+  *Published: 2021* - *Journal: Health Services Research*
+
+- **[Artificial intelligence in biomedicine: A roadmap for the future](https://www.nature.com/articles/s42256-024-00944-1)**  
+  Outlines potential AI applications in genomics and personalized medicine.  
+  *Published: 2024* - *Journal: Nature Machine Intelligence*
+
+- **[AI and machine learning in COVID-19 research: the Lancet Digital Health series](https://www.thelancet.com/journals/lancet/article/PIIS0140-6736(25)00202-8/fulltext)**  
+  Discusses the impact of AI in enhancing COVID-19 research and treatment planning.  
+  *Published: 2023* - *Journal: The Lancet*
+
+- **[Applications of Large Language Models in Healthcare: A Systematic Review](https://www.nature.com/articles/s41746-024-01258-7)**  
+  Analyzes LLM applications in clinical decision support and patient communication.  
+  *Published: 2024* - *Journal: Nature Medicine*
+
+- **[Investigating the Role of AI-Driven Large Language Models in Drug Discovery](https://pmc.ncbi.nlm.nih.gov/articles/PMC10920625/)**  
+  Discusses LLM applications in drug discovery processes.  
+  *Published: July 2023* - *Journal: Nature Reviews Drug Discovery*
+
+- **[Leveraging Large Language Models for Mental Health: Opportunities and Challenges](https://onlinelibrary.wiley.com/doi/10.1002/hcs2.61)**  
+  Addresses how LLMs can enhance therapeutic communication in mental health.  
+  *Published: 2023* - *Journal: Health Services Research*
+
+- **[A Survey on Large Language Models in the Life Sciences and Healthcare](https://arxiv.org/html/2409.16860v1)**  
+  Explores the landscape of LLM applications in life sciences.  
+  *Published: September 2024* - *Journal: ArXiv*
+
+- **[Large Language Models Encode Biological Knowledge](https://www.nature.com/articles/s41591-025-03520-1)**  
+  Examines how LLMs encode biological knowledge for diagnostics and therapeutic development.  
+  *Published: 2025* - *Journal: Nature Medicine*
+
+- **[Harnessing the power of large language models for state-of-the-art genomic medicine](https://www.nature.com/articles/s41587-024-02534-3)**  
+  Discusses LLMs in genomic medicine to enhance data interpretation and patient outcomes.  
+  *Published: 2024* - *Journal: Nature Biotechnology*
+
+- **[Exploring the Applications of LLM-Based Agents in Biology and Medicine](https://pmc.ncbi.nlm.nih.gov/articles/PMC11339493/)**  
+  Reviews the role of LLMs in diagnostics and research.  
+  *Published: 2023* - *Journal: Journal of Biomedical Informatics*
+
+- **[Applications of Large Language Models in Biology and Medicine](https://www.annualreviews.org/content/journals/10.1146/annurev-biodatasci-102224-074736)**  
+  Reviews applications of LLMs in analyzing and interpreting biological data.  
+  *Published: 2023* - *Journal: Annual Review of Bioinformatics and Data Science*
+
+This compilation provides an insightful glance into evolving methodologies leveraging LLMs in biology and medicine, showcasing a fundamental shift toward integrating AI in health-related processes.