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@Liu-Hy Liu-Hy commented Oct 14, 2025

Thank you for maintaining this excellent resource for the community. In this PR, we request to add two papers from our research lab that are relevant to the applications of LLM-based agents in biology and medicine:

  1. GenoTEX (added to Benchmarks section): An LLM Agent Benchmark for Automated Gene Expression Data Analysis

  2. GenoMAS (added to Agent papers section): A Multi-Agent Framework for Scientific Discovery via Code-Driven Gene Expression Analysis

Both papers focus on LLM-based agents for bioinformatics and genomic data analysis, which aligns well with the scope of this repository. The entries follow the existing formatting conventions with links to code repositories and project websites.

Thank you for considering our request.

- Added GenoTEX (2024.06 MLCB 2025 Oral) to Benchmarks section: An LLM agent benchmark for automated gene expression data analysis
- Added GenoMAS (2025.07 Preprint) to Agent papers section: A multi-agent framework for scientific discovery via code-driven gene expression analysis
- Both papers include links to code repositories and project websites
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