Skip to content

None value saving #634

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
wants to merge 4 commits into
base: master
Choose a base branch
from
Draft

None value saving #634

Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
7f5f49a
prevent potential crash when parameter is empty
AlexanderCaichen Dec 6, 2023
cc809fb
Merge branch 'aristoteleo:master' into none_value_saving
AlexanderCaichen Dec 10, 2023
b307ed6
adjust code to work for python v3.7 and consider case where key doesn…
AlexanderCaichen Dec 10, 2023
2a16e1e
Merge branch 'none_value_saving' of github.com:AlexanderCaichen/dynam…
AlexanderCaichen Dec 10, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
27 changes: 15 additions & 12 deletions dynamo/data_io.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -339,18 +339,21 @@ def export_rank_xlsx(adata, path="rank_info.xlsx", ext="excel", rank_prefix="ran

def export_kmc(adata: AnnData) -> None:
"""Save the parameters of kmc and delete the kmc object from anndata."""
kmc = adata.uns["kmc"]
adata.uns["kmc_params"] = {
"P": kmc.P,
"Idx": kmc.Idx,
"eignum": kmc.eignum,
"D": kmc.D,
"U": kmc.U,
"W": kmc.W,
"W_inv": kmc.W_inv,
"Kd": kmc.Kd,
}
adata.uns.pop("kmc")
kmc = adata.uns.get('kmc')
if kmc:
main_info("kmc parameter is empty or does not exist")
else:
adata.uns["kmc_params"] = {
"P": kmc.P,
"Idx": kmc.Idx,
"eignum": kmc.eignum,
"D": kmc.D,
"U": kmc.U,
"W": kmc.W,
"W_inv": kmc.W_inv,
"Kd": kmc.Kd,
}
adata.uns.pop("kmc", None)


def import_kmc(adata: AnnData) -> None:
Expand Down