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Fix: Add compatibility with anndata >= 0.10 #730

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merged 1 commit into from
Oct 13, 2025
Merged

Fix: Add compatibility with anndata >= 0.10 #730

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10 changes: 9 additions & 1 deletion dynamo/data_io.py
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,6 @@

from anndata import (
AnnData,
read,
read_csv,
read_excel,
read_h5ad,
Expand All @@ -17,6 +16,15 @@
read_umi_tools,
read_zarr,
)

# Compatibility with anndata >= 0.10
# The 'read' function was deprecated and removed in anndata 0.10.0
# Use read_h5ad as a fallback for backward compatibility
try:
from anndata import read
except ImportError:
# anndata >= 0.10 removed 'read', use 'read_h5ad' instead
from anndata import read_h5ad as read
from tqdm import tqdm

from .dynamo_logger import main_info
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