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Streamlined deployment - Simplified input parameters

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@dvitsios dvitsios released this 22 Nov 12:19
· 42 commits to master since this release
5a13922
  • Streamlined installation with "python setup.py install"
  • Tool now available at PyPI and can be installed through pip
  • The tool now offers three executable scripts to run from the command line (mantisml, mantisml-profiler and mantisml-overlap)
  • The user can define their own output folder via the -o option
  • Config input parameters have been drastically simplified: a lot of the underlying complexity has been hidden to the end user and only required input is disease/phenotype-associated terms in free text
  • The mantisml-overlap script is a new addition to the tool as it packages the enrichment test functionality between mantis-ml predictions and any external ranked gene list that is provided by the user