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@at-cg

ATCG

Algorithmic Techniques for Computational Genomics

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  1. PanAligner PanAligner Public

    Long read aligner for cyclic and acyclic pangenome graphs

    C 36 4

  2. mm2-plus mm2-plus Public

    Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)

    C 32 2

  3. minichain minichain Public

    Long-read aligner to pangenome graphs

    C 26 3

  4. RAFT RAFT Public

    C++ 24 1

  5. PHI PHI Public

    Pangenome graph-based genome inference

    Python 9 1

  6. ChainX ChainX Public

    Anchor chaining method for nucleotide sequences

    C++ 8 3

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