v2.21.0

[2.21.0] - 2025-06-16

2.20.0 Changed

• Update Boltz workflow to Boltz-2

2.20.0 Fixed

• Fix dependabot alert re: protobuf version in AlphaFold container.

v2.20.0

[2.20.0] - 2025-06-06

2.20.0 Changed

• Archive OpenFold workflow

2.20.0 Fixed

• Fix bug related to existing ECR repositories without AWS HealthOmics permission policy
• Fix bug related to new traced_sdpa_esm2_t36_3B_UR50D_fp16.pt parameter file for Chai-1 model

v2.19.0

[2.19.0] - 2025-03-25

2.19.0 Added

• Added support for RFAntibody ( #59 )

2.19.0 Changed

• Merge AlphaFold containers ( #52 )
• Extend PPL calcualtions to include ESM2 ( #55 )

2.19.0 Fixed

• Fix bug related to processing MSA and template search results for Chai-1 ( #61 )

v2.18.1

[2.18.1] - 2025-03-010

2.18.1 Fixed

• Fixed typo in Boltz-1 parameter URI

v2.18.0

[2.18.0] - 2025-03-07

2.18.0 Added

• Added support for Boltz-1 (Single Sequence Mode)
• Added support for Deepstabp
• Added support for Efficient Evolution
• Added support for Efficient Evolution
• Added support for ProteinMPNN-DDG
• Added support for PEP-Patch
• Added support for AggreScan 3D

v2.17.0

2.17.0 Added

• Added support for OpenFold2

v2.16.0

2.16.0 Added

• Added support for Colabfold-search workflow to generate MSA files.
• Added protein complex prediction workflow.

2.16.0 Changed

• Updated Chai-1 workflow to support MSA, template, and constraint files.
• Updated the indexed Uniref30 data source to S3.

v2.15.1

[2.15.1] - 2025-02-19

2.15.1 Fixed

• Updated container build logic in scripts/testrun.sh
• Added missing modules to README

v2.15.0

[2.15.0] - 2025-02-18

2.15.0 Added

• Added support for DiffAb antigen-specific design model from Helixon (PR 31)
• Added support for Humatch mAb humanization model from Oxford Protein Informatics Group (PR 32)

2.15.0 Fixed

• Update transformers version per CVE-2024-11393.

v2.14.1

[2.14.1] - 2025-01-29

2.14.1 Fixed

• Added missing region variable to Chai-1 base image.
• Updated container build script to better handle missing remote repository credentials.