2025_04

New version 2025_04 supports CRAM files.

2022_05

This release is a Python3 implementation of hla-genotyper. The tool was originally developed by John J. Farrell and later ported to python3 and modified by Axel Gschwind.
hla-genotyper predicts 4-digit HLA class I and II genotypes based on NGS reads aligned to hg19 or hg38.

This release has been tested with Python 3.6.9 and Python 3.8.0. It works as a stand-alone tool and requires the following Python packages:

• Bio
• numpy
• pysam

2022_04

This release is a python3 implementation of hla-genotyper. The tool was originally developed by John J. Farrell and later ported to python3 and modified by Axel Gschwind.
hla-genotyper predicts 4-digit HLA class I and II genotypes based on NGS reads aligned to hg19 or hg38.
It is a stand-alone python tool and requires the following python modules:

• Bio
• numpy
• pysam