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1. PopPUNK PopPUNK Public

   PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

   Python 100 20

2. pp-sketchlib pp-sketchlib Public

   Library of sketching functions used by PopPUNK

   C++ 31 8

3. ggCaller ggCaller Public

   Bifrost graph gene caller.

   C++ 95 6

4. ska.rust ska.rust Public

   Split k-mer analysis – version 2

   Rust 87 6

5. mandrake mandrake Public

   Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

   Python 38 2

6. unitig-caller unitig-caller Public

   Methods to determine sequence element (unitig) presence/absence

   C++ 20 3