Home

Please use the online documentation website going forward: https://bahanonu.github.io/ciatah/

Welcome to the CIAtah wiki!

See the sidebar for a list of help pages or see below. If a topic is not covered, let me know and I can see about adding it.

• Home
• *Common issues and fixes
• *Imaging analysis methods and code
• Behavior: Animal tracking
• Cross session cell alignment
• Inscopix
• Manual cell sorting of cell extraction outputs
• Preprocessing: Improving SNR
• Preprocessing: Motion Correction
• Preprocessing: Spatial filtering
• Preprocessing: Stripe removal from movies
• Preprocessing: Temporal downsampling