Release v7.2.0

Release Notes - IPR - Version client v7.2.0

Bugfixes
[DEVSU-2604] - user can't see variant-text info even with variant-text role
[DEVSU-2633] - IPR user edit dialog shows "added" even though the user was not added but edited instead
[DEVSU-2675] - timeout issues
[DEVSU-2676] - Check why opening multiple tabs would end up with the same report
[DEVSU-2677] - IPR search - num pad "enter" and main keyboard "enter" function differently
[DEVSU-2679] - IPR search: some SV strings w spaces parsed incorrectly in filter
[DEVSU-2684] - New custom set filter pass condition bug
[DEVSU-2692] - possible permissions bug with rapid report summary changes
[DEVSU-2695] - VAF sorting in SNV tables - number sorting as string
[DEVSU-2696] - SMAD4 variant shows up with an ENS ID in IPR resistance table
[DEVSU-2707] - can't reorder rows in chemoresistance table
[DEVSU-2713] - IPR small mutation search missing variants
[DEVSU-2715] - Whitescreen upon searching reports based on kbvariant
[DEVSU-2738] - display gene name with 'amplification' in rapid report summary table
[DEVSU-2765] - saving analyst comments - intermittent failure
[DEVSU-2763] - Fix bug when disabling top rapid report table as option for non-therapeutic statements
[DEVSU-2760] - Limit width of set filter in reports search view

New Features
[DEVSU-2471] - Ability to add therapeutic options to front page of the rapid report
[DEVSU-2629] - add ability to add all users in one project, into another project
[DEVSU-2758] - use cache to load main reports view whenever possible

Tasks
[DEVSU-2634] - update display of therapy list in rapid report summary table 1
[DEVSU-2639] - get signature variant 'gene' column value from signatureName
[DEVSU-2643] - Saving analyst comments
[DEVSU-2646] - Question about the biopsy type on front page of TGR and genomic report
[DEVSU-2648] - Make condensed view the default for the TGR (rapid report)
[DEVSU-2669] - '#'-type links to single rows in kb matches section
[DEVSU-2670] - add api/client compatibility matrix to PORI IPR documentation
[DEVSU-2671] - add client view for user to set which notification types they want
[DEVSU-2689] - analysis/signatures history not being displayed in settings page in IPR
[DEVSU-2697] - Make edit text button on analyst comments fixed in position
[DEVSU-2723] - trigger signature removal when variants are added to rapid report summary tables
[DEVSU-2725] - Drop 'comments' column and edit comments function in rapid report summary
[DEVSU-2730] - update display of rapid report summary table 1 where there are no treatments to show
[DEVSU-2731] - resolve action cell issue in rapid report summary table 1
[DEVSU-2741] - don't display times in report print view signatures
[DEVSU-2762] - Hide Evidence Level column in kbmatches view
[DEVSU-2756] Format github release PR desc to tabled format on jira

Improvements
[DEVSU-2620] - don't delete statements/variants when removing them from rapid report summary
[DEVSU-2655] - Search View UI Improvement
[DEVSU-2658] - Rapid report PDFs Name Update
[DEVSU-2674] - don't close window when backdrop is clicked while editing comments
[DEVSU-2681] - Add custom multi filter
[DEVSU-2682] - Encode search url with parameters
[DEVSU-2710] - load front page from cache when returning to it from a report
[DEVSU-2714] - Add helper pop-up to explain search fields in report search
[DEVSU-2716] - Add export to TSV feature to all reports view
[DEVSU-2722] - only deliver kb statements to rapid report summary therapy table when context is therapy
[DEVSU-2733] - show error text when loading user/me fails on front page loading
[DEVSU-2750] - fix width of columns in kbmatch view

v7.1.1

Release Notes - IPR - Version client v7.1.1

Bugfixes
[DEVSU-2708] - Rapid table 1 on edit changes multiple rows

v7.1.0

Release Notes - IPR - Version client v7.1.0

Bugfixes
[DEVSU-2440] - TO table printing out of order
[DEVSU-2500] - TO table format in PDF report
[DEVSU-2503] - therapeutic options ordering in print view
[DEVSU-2511] - merge cells in print view without reordering
[DEVSU-2590] - Single Genome TMB - not separate Intersect TMB Score
[DEVSU-2635] - deleting one therapy deletes ALL therapies for that variant in rr summary

New Features
[DEVSU-2593] - Rework Search View in Client

Tasks
[DEVSU-2487] - make gene viewer columns orderable/searchable
[DEVSU-2493] - search reports by potential therapeutic target
[DEVSU-2508] - export germline IPR reports
[DEVSU-2583] - update new user creation/user editing to use react-query
[DEVSU-2613] - update variant-texts page to use react-query
[DEVSU-2582] - update project page to use react-query
[DEVSU-2614] - update users page to use react-query
[DEVSU-2627] - rename rapid report pdfs
[DEVSU-2649] - FFPE samples missing MSI status in TGR report

Improvements
[DEVSU-2468] - update create-new-user display to show outcome of graphkb user creation
[DEVSU-2547] - display 'context' column in "Potential Resistance and Toxicity" table
[DEVSU-2638] - set key variant as default search category

v7.0.2

Release Notes - IPR - Version client v7.0.2

Bug

• [DEVSU-2603] - right-click on some text on IPR KB page makes page go white
• [DEVSU-2623] - Cancer Predisposition page is not loading for POG2039

v7.0.1

Release Notes - IPR - Version client v7.0.1

Bug

• [DEVSU-2574] - Genomic report->germline table undefined values
• [DEVSU-2587] - fix pcp-tgr summary page
• [DEVSU-2589] - analyst comments removed when hitting the close button
• [DEVSU-2591] - Using searchbar on IPR genomic report KB match page makes page go blank
• [DEVSU-2597] - Fix undefined 'kbmatchTag' error in kb matches view
• [DEVSU-2599] - IPRWYSIWYGEditor needs reset after closing editing instead of saving state

Task

• [DEVSU-2536] - log2cna - remove this field

Improvement

• [DEVSU-2559] - add delete button to actions in potential therapeutic targets tables

Release/v7.0.0

IPR Client Release v7.0.0

Bugfixes

• [DEVSU-2438] - analyst comments can't be deleted
• [DEVSU-2445] - POG1852: incorrect collapsing of variants from multiple statements into 1 KB match?
• [DEVSU-2469] - Signature in TO table appear as "undefined" in printed report
• [DEVSU-2470] - print view broken in dev
• [DEVSU-2482] - gene viewer not available for genes in therapeutic targets rows
• [DEVSU-2486] - enable adding signature-type kbmatches to therapeutic targets tables
• [DEVSU-2510] - when merged cells in therapeutic options spill over page break, repeat gene/variant cell content
• [DEVSU-2516] - rows with different contexts being merged in kbmatches tables
• [DEVSU-2546] - KB Matches active link set incorrectly
• [DEVSU-2549] - cancerType not a valid property for variant texts
• [DEVSU-2563] - update small mutation section default columns
• [DEVSU-2565] - fix rapid report drug names in summary table row popup

New Features

• [DEVSU-2459] - client updates to make report signatures customizable
• [DEVSU-2552] - Hide function for microbial field on Summary page

Tasks

• [DEVSU-2461] - Hide SV burden from genomic report front page by default
• [DEVSU-2465] - add intersect_tmb_score to rapid report tumour summary section
• [DEVSU-2467] - update client to handle changed backend modelling of kbmatch/kbstatement
• [DEVSU-2479] - add notice re keycloak to user creation screen
• [DEVSU-2485] - gene viewer doesn't work for signature-type variants
• [DEVSU-2492] - add frontend support for kbmatches search
• [DEVSU-2505] - column updates for kbmatches in client
• [DEVSU-2506] - can't delete multimatch statement
• [DEVSU-2540] - turn off coalescing - temporarily?
• [DEVSU-2557] - handle preset, resettable kbmatch table assignment

Improvements

• [DEVSU-2433] - Add checkbox for option to create GraphKB user when create new IPR user
• [DEVSU-2460] - only display signatures associated with the report type

v6.31.1

Release/v6.31.1 notes:

Bug
[DEVSU-2427] - user without projects can't add new user because projects and groups don't load
[DEVSU-2431] - Error adding user: SyntaxError: Unexpected token '<', "<!DOCTYPE "... is not valid JSON when signing report

Improvement
[DEVSU-2370] - add time to 'you will be logged out' message

v6.31.0

Release Notes - IPR - Version client v6.31.0

Bugfixes
[DEVSU-2408] - Analysts can't change report status on IPR
[DEVSU-2410] - Can't sign reports in IPR
[DEVSU-2411] - therapeutic options table is mis-ordered in print views
[DEVSU-2416] - users with report-assignment-access role can't assign selves to targeted gene reports

New Features
[DEVSU-2412] - sort by evidence in collapsed rows in PrintTable

v6.30.0

Release Notes - IPR - Version client v6.30.0

Bug

• [DEVSU-2153] - PDF genomic report sometimes missing sections
• [DEVSU-2256] - Add toggle for allowNotifications
• [DEVSU-2265] - Printed genomic report - issues with tables across two tables
• [DEVSU-2276] - "no rows to show" cut off in expression correlation tables
• [DEVSU-2277] - update 'do you want to stay logged in' box options
• [DEVSU-2287] - new template can't be created with only one section
• [DEVSU-2288] - dropdown menu for therapeutic targets starts at 3 letters, genes start at 2
• [DEVSU-2297] - edit user pop-up in client is awkward/buggy
• [DEVSU-2299] - in projects view, page info is cut off
• [DEVSU-2306] - admins should see all projects in projects view
• [DEVSU-2325] - Underline Not Working in Appendix Text
• [DEVSU-2351] - make captiv-8 field editable in the genomic report
• [DEVSU-2352] - appendix text loading to report summary display is broken
• [DEVSU-2353] - Reordering TO table does not work as intended
• [DEVSU-2355] - variant/cancer type values don't get set to null after variant text is created
• [DEVSU-2367] - bullet points missing from analyst comments field
• [DEVSU-2369] - remove option to add clinical trial rows to PTO tables
• [DEVSU-2375] - Make paragraph element show spacing even if empty
• [DEVSU-2376] - dropdown filter on column doesn't work on second page
• [DEVSU-2377] - TumourSummary edit is missing a list of props
• [DEVSU-2383] - Allow managers to edit appendices without specific projects
• [DEVSU-2390] - error when sending test email
• [DEVSU-2392] - handle null values for recruitment status
• [DEVSU-2393] - NaN for PanGen report count in projects view
• [DEVSU-2394] - bug with admin user project access
• [DEVSU-2396] - TumourSummaryEdit fix for Genomic and Rapid
• [DEVSU-2398] - update rapid report to get patho tc from sampleInfo not reportSampleInfo
• [DEVSU-2399] - fix report-sample-info acquisition for report types in client
• [DEVSU-2401] - report assignment access users can't assign reports
• [DEVSU-2402] - 'group edited' message when group editing failed
• [DEVSU-2405] - threshold for keyvariant search isn't making it to the search url correctly

New Feature

• [DEVSU-1028] - Aggregating therapeutic options table gene variant information
• [DEVSU-2138] - Hyperlink POGs in correlation page
• [DEVSU-2247] - add filter by variant to reports
• [DEVSU-2278] - update appendix editing in client
• [DEVSU-2300] - 'copy user permissions' feature for client
• [DEVSU-2336] - add frontend for setting/displaying variant text
• [DEVSU-2337] - edit client handling of sample info, if necessary

Task

• [DEVSU-2099] - update potential therapeutic targets table to include signature
• [DEVSU-2161] - display name of user who created the report, somewhere
• [DEVSU-2163] - when report status is 'archived', don't allow any changes except to status
• [DEVSU-2257] - add button to send test notification email to client
• [DEVSU-2267] - remove 'beta' print option for non-genomic report types; rename option
• [DEVSU-2275] - create separate summary types for genomic and rapid types
• [DEVSU-2281] - add info to analysis status section
• [DEVSU-2290] - Enable 'Add to Therapeutic Targets' Options for KB Matches
• [DEVSU-2298] - fix groups view add/delete user
• [DEVSU-2301] - 'my reports' filter
• [DEVSU-2321] - review types in ipr-client - make sure no duplicates
• [DEVSU-2346] - change potential-chemoresistance tablename to 'potential resistance and toxicity'

Improvement

• [DEVSU-1964] - decrease whitespace in reports
• [DEVSU-2119] - print report header contents update
• [DEVSU-2269] - fix how user groups are handled
• [DEVSU-2271] - implement condensed view for other report types
• [DEVSU-2272] - remove the ability to edit template appendix texts on reports
• [DEVSU-2302] - minor appendixview visual changes
• [DEVSU-2303] - in AppendixView, display only first 10 or so lines of the appendix text
• [DEVSU-2304] - add user-group descriptions
• [DEVSU-2305] - less minor appendixview visual changes
• [DEVSU-2308] - make it possible for users to view their own groups and projects
• [DEVSU-2312] - add delete/create for appendix text
• [DEVSU-2313] - add reviewer and creator columns to reports view
• [DEVSU-2319] - use tooltips for viewing contents of cells with long string data
• [DEVSU-2333] - move biopsy collection date up to the patient/tumour summary in the client
• [DEVSU-2334] - add biopsy_type field to report view
• [DEVSU-2342] - Reactivate PatientsView in IPR
• [DEVSU-2360] - convert variant-text cancer-type field to a list
• [DEVSU-2362] - changes to microbial status field handling in client
• [DEVSU-2371] - Allow editing of Cancer Type on variant text
• [DEVSU-2389] - update display of lists of objects in DetailView

Non-tickets

• bugfix/add-remaining-group-descriptions - add three remaining groups to displayed groups
• bugfix/remove-reportsview-biopsytype-column - remove column not wanted by clininfo

v6.29.2

Release Notes - IPR - Version client v6.29.2

Task

• [DEVSU-2258] - change captiv-8 score in rapid report only to 'preliminary captiv-8 score'

Improvement

• [DEVSU-2120] - display pathway analysis legend on same page as pathway analysis