0.10.11

Features

n/a

Improvements

• bhl pdf endpoints cannot be inferred from bhl item part id for extern… …ally hosted pdfs; related to #339
• when encountering a sciELO resource with pdf request; check for javas… …cript-redirects and register associated content; #336 fyi @myrmoteras
• favor alternate/seeAlso contentIds associated over content associated…… with original locations; related to #336
• support copy-paste tracking of GBIF dataset via their landing page ht…
  …tps://www.gbif.org/dataset/e4d3fc77-1d94-495b-96ff-3fe8b8f7a3bd fyi @seltmann

Example:

preston track https://www.gbif.org/dataset/e4d3fc77-1d94-495b-96ff-3fe8b8f7a3bd\
 | preston dwc-stream\
 | head -1\
 | jq .

yields

{
  "http://www.w3.org/ns/prov#wasDerivedFrom": "line:zip:hash://sha256/c2e545a14943beb12878b57e02f0718d3e784151b692ffdb51ebf08ffbb73dfe!/occurrence.txt!/L2",
  "http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "http://rs.tdwg.org/dwc/terms/Occurrence",
  "http://rs.tdwg.org/dwc/text/id": "861c9d4e-d8e1-11e2-99a2-0026552be7ea",
  "http://rs.tdwg.org/dwc/terms/country": "MEXICO",
  "http://rs.tdwg.org/dwc/terms/minimumDepthInMeters": null,
  "http://rs.tdwg.org/dwc/terms/verbatimLongitude": "098 47 00 W",
  "http://rs.tdwg.org/dwc/terms/datasetName": "AMNH Hymenoptera",
  "http://rs.tdwg.org/dwc/terms/individualCount": "1",
  "http://rs.tdwg.org/dwc/terms/associatedOrganisms": null,
  "http://rs.tdwg.org/dwc/terms/stateProvince": "Tamaulipas",
  "http://rs.tdwg.org/dwc/terms/basisOfRecord": "PreservedSpecimen",
  "http://rs.tdwg.org/dwc/terms/infraspecificEpithet": null,
  "http://rs.tdwg.org/dwc/terms/occurrenceID": "861c9d4e-d8e1-11e2-99a2-0026552be7ea",
  "http://rs.tdwg.org/dwc/terms/municipality": null,
  "http://rs.tdwg.org/dwc/terms/locality": "Padilla",
  "http://rs.tdwg.org/dwc/terms/specificEpithet": "completa",
  "http://rs.tdwg.org/dwc/terms/island": null,
  "http://rs.tdwg.org/dwc/terms/family": "Apidae",
  "http://rs.tdwg.org/dwc/terms/verbatimEventDate": "5/17/1952",
  "http://rs.tdwg.org/dwc/terms/locationID": "0004be86-935b-4850-84fe-78ef6cbc2954",
  "http://rs.tdwg.org/dwc/terms/minimumElevationInMeters": null,
  "http://rs.tdwg.org/dwc/terms/phylum": "Arthropoda",
  "http://rs.tdwg.org/dwc/terms/typeStatus": null,
  "http://rs.tdwg.org/dwc/terms/class": "Insecta",
  "http://purl.org/dc/terms/license": "Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/",
  "http://rs.tdwg.org/dwc/terms/preparations": "Pinned",
  "http://rs.tdwg.org/dwc/terms/county": null,
  "http://rs.tdwg.org/dwc/terms/associatedOccurrences": null,
  "http://rs.tdwg.org/dwc/terms/taxonID": "562d1f89-9d1b-4f4b-83a5-29f12f9e99f0",
  "http://rs.tdwg.org/dwc/terms/order": "Hymenoptera",
  "http://rs.tdwg.org/dwc/terms/genus": "Anthophorula",
  "http://rs.tdwg.org/dwc/terms/catalogNumber": "AMNH_BEE 00198554",
  "http://rs.tdwg.org/dwc/terms/institutionCode": "AMNH",
  "http://rs.tdwg.org/dwc/terms/kingdom": "Animalia",
  "http://rs.tdwg.org/dwc/terms/scientificName": "Anthophorula (Anthophorula) completa Cockerell, 1935",
  "http://rs.tdwg.org/dwc/terms/recordedBy": "M. A. Cazier, W. J. Gertsch & R. Schrammel",
  "http://rs.tdwg.org/dwc/terms/samplingProtocol": "Netting",
  "http://rs.tdwg.org/dwc/terms/verbatimLatitude": "24 01 00 N",
  "http://rs.tdwg.org/dwc/terms/subgenus": "Anthophorula",
  "http://rs.tdwg.org/dwc/terms/waterBody": null,
  "http://purl.org/dc/terms/rightsHolder": "American Museum of Natural History",
  "http://rs.tdwg.org/dwc/terms/sex": "Male",
  "http://rs.tdwg.org/dwc/terms/otherCatalogNumbers": null
}

Bugs

• add default bhl keywords even when custom RIS keywords are present; r… …elated to #340; and #325 (comment)

0.10.10

Features

n/a

Improvements

n/a

Bugs

• make Zenodo existing record match by alternate identifier exact; #338

0.10.9

Features

n/a

Improvements

• update rpm spec generated to be more compliant by @alexlancaster
• add BHL keywords as suggested by @myrmoteras .
• limit zenodo search by hash results: only one hit is needed

Bugs

• support counting bytes in large files when preparing for Zenodo uploa……d; related to #337

0.10.8

Features

n/a

Improvements

n/a

Bugs

• fixes related to newly introduced rpm package #332 big thanks to @alexlancaster for review comments and suggestions

0.10.7

Features

n/a

Improvements

• populate journal issue as discussed in #327 suggested by Plazi's @myrmoteras
• remove trailing comma for RIS author string; related to #326 suggested by Plazi's @myrmoteras
• add biodiversity keyword for bhl related RIS entries; related to #328 suggested by Plazi's @myrmoteras
• use constant for Zenodo relation types; related to #331
• upgrade of jetty following GHSA-q4rv-gq96-w7c5 .
• add integration for zenodo license mapping; related to #325 as needed for Plazi's @mymoteras BHL license normalization
• introduce [preston zenodo --explicit-license-only]; related to #325
• towards supporting preston rpm install #332 @alexlancaster

Example using explicit license and license mapping for Zenodo deposits -

export ZENODO_ENDPOINT=https://sandbox.zenodo.org
export ZENODO_TOKEN=[secret]

git clone https://github.com/jhpoelen/bhl-corpus-tracker
cd bhl-corpus-tracker

# generate test set up to 50 deposits
./sample.sh 50 

# generate the license map
cd target/[sample uuid]

cat zenodo-sample.json\
 | preston track

LICENSE_MAP_VERSION=$(../../ls-part-licenses.sh| preston track | grep hasVersion | tail -n1 | grep -oE "hash://sha256/[a-f0-9]{64}")

preston ls\
 | preston zenodo --explicit-license-only --license ${LICENSE_MAP_VERSION}

Bugs

n/a

0.10.6

Features

n/a

Improvements

• make taxodros pub info configurable; related to TaxoDros/TaxoDros.github.io#46 TaxoDros/TaxoDros.github.io#46
• add support for eol-style table dwc-a #319 fyi @jhammock @KatjaSchulz
• towards publishing a Zenodo deposit with multiple files; #322
• prune dependencies; related to #322
• refactor to make doi usage in RIS streamer configurable; related to #324
• wire up re-use doi configuration; related to zenodo/zenodo#2536

Bugs

n/a

0.10.5

Features

n/a

Improvements

• implement workaround for un-escaped characters Zenodo file content url #317

instead of url offered by Zenodo API

https://zenodo.org/api/records/13505983/files/Thuiller%20et%20al.%20-%202006%20-%20INTERACTIONS%20BETWEEN%20ENVIRONMENT,%20SPECIES%20TRAITS,%20.]/content

the following url is constructed (note the escaped , and ]

https://zenodo.org/api/records/13505983/files/Thuiller%20et%20al.%20-%202006%20-%20INTERACTIONS%20BETWEEN%20ENVIRONMENT%2C%20SPECIES%20TRAITS%2C%20.%5D/content

Bugs

n/a

0.10.4

Features

n/a

Improvements

• support verification of composite content IRIs (#316) such as cut:hash://md5/23048141cf6ca7176c98772905d2f3c3!/b55987-58463

• support tracking of additional GBIF api endpoint patterns

preston track https://gbif.org/api/dataset/d6097f75-f99e-4c2a-b8a5-b0fc213ecbd0\
 | preston dwc-stream

is now supported in addition to

preston track https://api.gbif.org/v1/dataset/d6097f75-f99e-4c2a-b8a5-b0fc213ecbd0\
 | preston dwc-stream

Bugs

n/a

0.10.3

Features

n/a

Improvements

• allow to retrieve restricted content from Zenodo if credential are available #314
• refactor streaming functionality into preston-stream module to facilitate reuse (aka by Elton, globalbioticinteractions/elton#52 globalbioticinteractions/globalbioticinteractions#1030)

Bugs

n/a

0.10.2

Features

n/a

Improvements

• introduce preston-stream module to decouple content specific streaming (e.g., pdf, tiff, text) from content addressed storage

Bugs

n/a