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fix: Use mamba in mulled-build #810

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Merged
merged 1 commit into from
Oct 11, 2022
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fix: Use mamba in mulled-build #810

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1 change: 1 addition & 0 deletions bioconda_utils/involucro
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Original file line number Diff line number Diff line change
Expand Up @@ -2,4 +2,5 @@

exec involucro \
-set POSTINSTALL='create-env --conda=: /usr/local' \
-set PREINSTALL='conda() { mamba "${@}" ; }' \
"${@}"
2 changes: 2 additions & 0 deletions bioconda_utils/pkg_test.py
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Original file line number Diff line number Diff line change
Expand Up @@ -159,6 +159,8 @@ def test_package(
# galaxy-lib always downloads involucro, unless it's in cwd or its path is explicitly given.
# We inject a POSTINSTALL to the involucro command with a small wrapper to
# create activation / entrypoint scripts for the container.
# We also inject a PREINSTALL to alias conda to mamba so `mamba install` is
# used instead of `conda install` in the container builds.
involucro_path = os.path.join(os.path.dirname(__file__), 'involucro')
if not os.path.exists(involucro_path):
raise RuntimeError('internal involucro wrapper missing')
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