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Update mop_mod.rst
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lucacozzuto authored Apr 2, 2024
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Expand Up @@ -7,7 +7,11 @@ MOP_MOD
.. autosummary::
:toctree: generated

This module takes as input the output from MOP_PREPROCESS: basecalled fast5 reads, together with their respective fastq files and unspliced alignments to the transcriptome . It runs four different RNA detection algorithms (Epinano, Nanopolish, Tombo and Nanocompore) and it outputs the predictions generated by each one of them as individual tab-delimited files.
This pipeline takes as input the output from MOP_PREPROCESS: basecalled fast5 reads, together with their respective fastq files and unspliced alignments to the transcriptome . It runs four different RNA detection algorithms (Epinano, Nanopolish, Tombo and Nanocompore) and it outputs the predictions generated by each one of them as individual tab-delimited files.

.. image:: ../img/flow_mod.png
:width: 600
:alt: mop_preprocess graph

Input Parameters
======================
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