v1.1.6

What's Changed

• Infores catalog YAML standardization pipeline by @matentzn in #86
• Add automat-cohd by @matentzn in #88
• Add infores:automat-cohd by @karafecho in #85
• Run standaridisation again by @matentzn in #89
• Preserve and fix block scalar formatting in YAML output by @matentzn in #91
• add new infores:fda-pharmacogenomics-biomarker by @Qi-ISB in #80
• Sync RTX-KG2 agent_type and knowledge_level fields by @matentzn in #92
• Automate xrefs to FAIRsharing by @cthoyt in #74
• Migrate setup to uv by @matentzn in #93
• Add mappings to FAIRsharing by @cthoyt in #94
• Some remaining cleanup from Poetry to uv for commands by @matentzn in #95
• Make names required and add missing names by @matentzn in #96
• Add additional information to UMLS CHV by @matentzn in #97
• Deprecate EBI Gene2Phenotype and add Gene2Phenotype resource by @matentzn in #98
• Add RefMet resource to infores_catalog.yaml by @matentzn in #99
• Add arax, bte, and sipr shepherd aras to infores catalog by @maximusunc in #102
• Update infores_catalog.yaml by @eKathleenCarter in #101
• Adding new sources for DGIdb and Intact ingests by @mbrush in #104
• Add dogpark by @sierra-moxon in #105

New Contributors

• @mbrush made their first contribution in #104

Full Changelog: v1.1.5...v1.1.6

v1.1.5

What's Changed

• Add OBO ontology entries for issue #58 by @kevinschaper in #84

Full Changelog: v1.1.4...v1.1.5

v1.1.4

What's Changed

• Add Retriever by @tokebe in #79

New Contributors

• @tokebe made their first contribution in #79

Full Changelog: v1.1.3...v1.1.4

v1.1.3

What's Changed

• Add NORD to infores_catalog.yaml by @matentzn in #71
• fooddb -> foodb by @andrewsu in #72
• Update infores_catalog.yaml by @karafecho in #73
• Add some missing names by @cthoyt in #76
• Add shepherd aragorn by @maximusunc in #77
• Update infores_catalog.yaml by @gglusman in #78

New Contributors

• @cthoyt made their first contribution in #76
• @gglusman made their first contribution in #78

Full Changelog: v1.1.2...v1.1.3

v1.1.2

What's Changed

• Get rid of redundant "infores" in filename for md pages by @matentzn in #70

Full Changelog: v1.1.1...v1.1.2

v1.1.1

What's Changed

• Add pharmacogenomicsKG, primeKG, and cellmarker by @Qi-ISB in #56
• Add icd10cm and icd11-foundation to infores_catalog.yaml by @matentzn in #59
• Add infores:amyco entry by @colleenXu in #55

New Contributors

• @colleenXu made their first contribution in #55

Full Changelog: v1.1.0...v1.1.1

v1.1.0

What's Changed

• Update Aragorn kp script to not use kp registry by @maximusunc in #32
• Add infores information for sankey for the automat sources by @eKathleenCarter in #33
• replace sankey_diagram with data_flow_diagram for maintaining URL in … by @sierra-moxon in #31
• Add resources to automation by @sierra-moxon in #36
• update with new EHRMLA clinical connections infores by @Qi-ISB in #39
• Add infores list for Clinical Data Services KPs by @CaseyTa in #40
• Added script to generate a json containing the sources currently used by Unsecret by @kaiwenho in #41
• add unsecret to the automated run, move weekly URL check that inevita… by @sierra-moxon in #42
• restructure makefile and targets so that schema and catalog validatio… by @sierra-moxon in #43
• fix gen-python, remove inlining, and add test for schema validation by @sierra-moxon in #44
• Update infores_catalog.yaml by @karafecho in #47
• Update infores_catalog.yaml by @karafecho in #48
• Automat ohdc by @maximusunc in #49
• Add consumes fields for text mining provider kps by @bill-baumgartner in #50
• add phenopacket store by @iQuxLE in #52
• Add pipeline to generate resource level pages in docs by @matentzn in #61
• Add first draft of generated registry files by @matentzn in #62
• Add RUN variable to generate-resource-docs by @matentzn in #63
• Rename path to resource markdown files by @matentzn in #64
• Change gendoc order by @matentzn in #65
• Update infores_catalog.yaml with SPOKE KP "consumes" information by @DnlRKorn in #53
• data: added external infores data script for genetics kp (issue 6) by @marcdubybroad in #54
• add status, KL/AT by @sierra-moxon in #66
• Add additional gaf sources by @kevinschaper in #69
• Add tsv/json/jsonl (& yaml) release artifacts by @kevinschaper in #68

New Contributors

• @CaseyTa made their first contribution in #40
• @kaiwenho made their first contribution in #41
• @bill-baumgartner made their first contribution in #50
• @iQuxLE made their first contribution in #52
• @matentzn made their first contribution in #61
• @DnlRKorn made their first contribution in #53
• @marcdubybroad made their first contribution in #54
• @kevinschaper made their first contribution in #69

Full Changelog: v1.0.0...v1.1.0

v1.0.0

Note:

version 1.0.0 on account of changes in knowledge_level and agent_type enumerations and refactoring of directory structure and GH actions.

What's Changed

• fix tests, update KL/AT to match "long term" definitions, deprecate KGEA, regenerate artifacts, rename scripts directory by @sierra-moxon in #24
• Added annotator entry in infores_catalog.yaml by @newgene in #18
• Update infores-catalog.yaml with our latest EHRMLA May Treat KG by @Qi-ISB in #19
• Update infores_catalog.yaml by @karafecho in #20
• Create infores:automat-ehr-may-treat-kp and infores:isb-EHRMLA-data entries by @Qi-ISB in #21
• Update infores_catalog.yaml by @eKathleenCarter in #23
• regenerate project files, remove test check for valid URLs for now - change to daily run by @sierra-moxon in #25
• add information on relationships between infores resources by @andrewsu in #22
• Add Aragorn by @maximusunc in #26
• MolePro resources by @vdancik in #27
• Sankey by @sierra-moxon in #28
• Test actions by @sierra-moxon in #29

New Contributors

• @newgene made their first contribution in #18
• @Qi-ISB made their first contribution in #19
• @eKathleenCarter made their first contribution in #23
• @andrewsu made their first contribution in #22
• @maximusunc made their first contribution in #26
• @vdancik made their first contribution in #27

Full Changelog: v0.2.9...v0.2.10

v0.2.9

What's Changed

• Update infores_catalog.yaml by @karafecho in #16
• Gglusman patch 1 - fixing up test failures by @sierra-moxon in #17

Full Changelog: v0.2.8...v0.2.9

v0.2.8

What's Changed

• update SPOKE URL to the ARA page by @sierra-moxon in #6
• Fix go cam url by @gaurav in #12
• Fix some URLs containing em-dashes by @gaurav in #7
• Update infores_catalog.yaml by @karafecho in #11
• Mbrush patch1 by @mbrush in #13
• Signor by @beasleyjonm in #14

New Contributors

• @beasleyjonm made their first contribution in #14
• @gaurav made their first contribution in #7
• @karafecho made their first contribution in #11

Full Changelog: v0.2.7...v0.2.8