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Error Running scGPT Analysis on scGPT Hub

Status: Open.

#313 In bowang-lab/scGPT;

· chadpark07 opened on Jul 2, 2025

Various cancer types in the pretrained "pan-cancer model"

Status: Open.

#311 In bowang-lab/scGPT;

· ksaroosh opened on Jun 19, 2025

IPython not in dependencies

Status: Open.

#310 In bowang-lab/scGPT;

· hubertdej opened on Jun 11, 2025

Data Basis for the Kidney scGPT Model

Status: Open.

#309 In bowang-lab/scGPT;

· AvonMickwitz opened on May 27, 2025

Problems in instalation involving jaxlib in "poetry install"

Status: Open.

#308 In bowang-lab/scGPT;

· goncalo-aroeira opened on May 8, 2025

Module Mismatch in the Tutorials

Status: Open.

#307 In bowang-lab/scGPT;

· altayunal opened on Apr 29, 2025

Installation of 0.2.4 and some other minor suggestions

Status: Open.

#306 In bowang-lab/scGPT;

· jinghuazhao opened on Apr 14, 2025

about annotation task

Status: Open.

#305 In bowang-lab/scGPT;

· qkrminho opened on Apr 12, 2025

Issue with setting up environment for Fine-tuning on Pre-trained Model for Cell-type Annotation

Status: Open.

#303 In bowang-lab/scGPT;

· mrburke00 opened on Mar 31, 2025

llvmlite "Cannot install scgpt==0.1.3 and scgpt==0.1.5 because these package versions have conflicting dependencies."

Status: Open.

#301 In bowang-lab/scGPT;

· felixm3 opened on Mar 13, 2025

How to obtain the Atlas for reference mapping with re-pretrained scGPT model?

Status: Open.

#300 In bowang-lab/scGPT;

· ZhengPeng7 opened on Mar 13, 2025

Concerns about the effectiveness of scGPT perturbation

Status: Open.

#298 In bowang-lab/scGPT;

· YuchengWang2023 opened on Mar 11, 2025