Releases: brainglobe/cellfinder
Releases · brainglobe/cellfinder
v1.7.0
What's Changed
- Remove save weights option from training widget by @parharti in #499
- Inform the user when they supply just the weights in place of the full model by @parharti in #490
- Pull Request: Implementing Issue #295 – "Check Location of Detected Cells in Tests" by @Menna1812 in #509
- Update pinned pytorch version by @ayush2281 in #519
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #521
- Fix #423 : Clean up TensorFlow-related code after migrating to Keras 3.0 with PyTorch backend by @0Anshu1 in #523
- Improve printing & logging by @parharti in #507
- Fix for deleted layers hanging around in CurationWidget by @DPWebster in #497
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #529
- Don't deepcopy input arrays to prevent loading into RAM by @matham in #531
- Expose CPU/GPU selection in Napari (default to GPU), remove use_scipy param (always True on CPU), and improve batch_size docstring (#464) by @Fede2717 in #503
- Run scheduled tests on napari main by @IgorTatarnikov in #533
New Contributors
- @parharti made their first contribution in #499
- @Menna1812 made their first contribution in #509
- @ayush2281 made their first contribution in #519
- @0Anshu1 made their first contribution in #523
- @DPWebster made their first contribution in #497
- @Fede2717 made their first contribution in #503
Full Changelog: 1.6.0...v1.7.0
v1.6.0
What's Changed
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #489
- Standardize .yml and .yaml Extensions for Consistency by @nischitkumar in #488
New Contributors
- @nischitkumar made their first contribution in #488
Full Changelog: v1.5.1...v1.6.0
v1.5.1
v1.5.0
What's Changed
- Import Qt elements from qt-niu by @adamltyson in #485
Full Changelog: v1.4.1...v1.5.0
v1.4.1
What's Changed
- Replaced NIU upload action with separate steps by @IgorTatarnikov in #478
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #480
- Use pypa/gh-action-pypi-publish stable release v1 by @lochhh in #481
- Use explicit len(arr)-count instead of just -count to handle count=0 by @matham in #484
New Contributors
Full Changelog: v1.4.0...v1.4.1
v1.4.0
What's Changed
- Move detection (2d/3d filtering, structure splitting) to PyTorch by @matham in #440
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #467
- Notify slack on scheduled test failure by @IgorTatarnikov in #469
- ensure trained_model is a Path before calling .suffix by @alessandrofelder in #471
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #472
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #474
- Unpin keras by @IgorTatarnikov in #475
- bump headless display action 2->3 by @alessandrofelder in #476
Full Changelog: v1.3.3...v1.4.0
v1.4.0-alpha.0
What's Changed
Full Changelog: v1.3.3...v1.4.0alpha0
v1.3.3
What's Changed
- Unpin numpy by @IgorTatarnikov in #452
- Remove x86 macOS runners from the test suite by @IgorTatarnikov in #453
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #455
- Unpin numpy by @adamltyson in #457
- Schedule weekly tests by @IgorTatarnikov in #458
- Pin
keras
version to 3.5.0 by @IgorTatarnikov in #462 - Allow napari GUI to accept custom weights by @IgorTatarnikov in #460
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #461
Full Changelog: v1.3.2...v1.3.3
v1.3.2
What's Changed
- Conform to new linting rules by @IgorTatarnikov in #447
- temporarily depend on numpy<2 by @alessandrofelder in #448
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #445
Full Changelog: v1.3.1...v1.3.2
v1.3.1
What's Changed
- Update supported Python versions by @adamltyson in #436
- Add citation to readme by @adamltyson in #438
- Prevent zero underflow in volume by @matham in #437
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #441
- Standardise contact information in readme by @adamltyson in #442
- Added xfail to tests that fail due to logging bug by @IgorTatarnikov in #444
Full Changelog: v1.3.0...v1.3.1