Save data to .brainglobe (#75)

* Save data to .brainglobe

* Add parent dir

morphapi/api/mpin_celldb.py

@@ -165,12 +165,3 @@ def download_dataset(self):
             fix_mpin_swgfile(f, self.data_path / f.name)
 
         shutil.rmtree(extracted_data_path.parent)
-
-        # # 2/1900 neurons still have a little bug, hopefully
-        # fixed in the future
-        # try:
-        #     return Neuron(data_file=fixed_file_path)
-        # except:  # Ideally in the next iteration this except won't
-        # be necessary
-        #     print(f"Unfixable problem while opening {file_path.name}")
-        #     return

morphapi/paths_manager.py

@@ -8,13 +8,13 @@
 # neurons morphology data etc)
 default_paths = dict(
     # APIs caches
-    allen_morphology_cache="Data/allen_morphology_cache",
-    mouselight_cache="Data/mouselight_cache",
-    neuromorphorg_cache="Data/neuromorphorg_cache",
-    meshes_cache="Data/meshes_cache",
+    allen_morphology_cache="allen_morphology_cache",
+    mouselight_cache="mouselight_cache",
+    neuromorphorg_cache="neuromorphorg_cache",
+    meshes_cache="meshes_cache",
     # Other
-    mouse_connectivity_cache="Data/mouse_connectivity_cache",
-    mpin_morphology="Data/mpin_morphology",
+    mouse_connectivity_cache="mouse_connectivity_cache",
+    mpin_morphology="mpin_morphology",
 )
 
 
@@ -32,11 +32,11 @@ def __init__(self, base_dir=None, **kwargs):
         # Get and make base directory
 
         if base_dir is None:
-            self.base_dir = Path.home() / ".morphapi"
+            self.base_dir = Path.home() / ".brainglobe" / "morphapi"
         else:
             self.base_dir = Path(base_dir)
 
-        self.base_dir.mkdir(exist_ok=True)
+        self.base_dir.mkdir(exist_ok=True, parents=True)
 
         for fld_name, folder in default_paths.items():
             # Check if user provided a path for this folder,