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Remove SWC file repair method #60

Merged
merged 1 commit into from
Apr 26, 2024
Merged

Remove SWC file repair method #60

merged 1 commit into from
Apr 26, 2024

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adamltyson
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Removes the repair_swc_file() method. This doesn't seem to be needed and causes problems by "fixing" problems that don't necessarily exist.

I'm removing this on the advice of @adrien-berchet as I don't know much about SWC files! Hopefully this will fix problems like this one. If all else fails, we can revert.

Existing morphapi and brainrender tests pass as they did before (that is to say, not entirely!). No tests added as this PR just removes code. Just after I closed #47 there seems to be an issue with neuromorpho though :(

Closes #59

@adamltyson adamltyson requested review from adrien-berchet and a team April 26, 2024 12:18
@adrien-berchet
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And more generally, I think it's better to handle I/O issues from MorphIO instead of trying to patch things up from morphapi. So when someone have I/O issues you can forward him to MorphIO issues.

@alessandrofelder alessandrofelder merged commit 118c7e7 into main Apr 26, 2024
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@alessandrofelder alessandrofelder deleted the remove-swc-repair branch April 26, 2024 13:53
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Creating a neuron from SWC fails with some files Check use of neuromorpho.org
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