Releases: broadinstitute/dig-dug-portal
Releases · broadinstitute/dig-dug-portal
October 2025 - ASHG
What's Changed
- Network graph by @qu-y in #782
- updates to network graph by @qu-y in #783
- Pigean fixed sigma by @moriondo2022 in #784
- wip - Network graph by @qu-y in #785
- More phenotypes by @moriondo2022 in #786
- show trait group in autocorrect by @moriondo2022 in #787
- Pigean phenotype map by @moriondo2022 in #788
- correct params for endpoints by @moriondo2022 in #789
- quick fix for indefinitely loading genes by @moriondo2022 in #790
- wip - mech graph by @qu-y in #791
- Graph page by @moriondo2022 in #792
- Small graph by @moriondo2022 in #793
- Short names by @moriondo2022 in #794
- Index search by @moriondo2022 in #795
- Single cell browser component by @a-shilin in #796
- DK byor tsv download by @dkjang in #798
- Single search bug fix with tissues list. by @dkjang in #799
- Pigean cleanup by @moriondo2022 in #797
- Rare phenotypes by @moriondo2022 in #801
- Cfde updates dec24 by @a-shilin in #802
- Phewas fixes by @moriondo2022 in #803
- Cfde updates dec24 by @a-shilin in #804
- Single cell browser component by @a-shilin in #805
- Multi tab data table in BYOR by @dkjang in #806
- Cfde updates dec24 by @a-shilin in #808
- Pigean all traits by @moriondo2022 in #807
- BYOR dynamic subsection option 'api' added by @dkjang in #810
- Pigean geneset fix by @moriondo2022 in #811
- Pigean hover by @moriondo2022 in #812
- Hover pin by @moriondo2022 in #813
- Single cell browser component by @a-shilin in #814
- Pigean search by @moriondo2022 in #815
- Plot sync by @moriondo2022 in #816
- Updates in BYOR data convert options by @dkjang in #817
- From parameter option added to BYOR data convert by @dkjang in #818
- Single cell browser component by @a-shilin in #819
- Dk api test by @dkjang in #820
- BYOR conditional feature rendering added by @dkjang in #826
- Single cell browser component by @a-shilin in #833
- Single cell browser component by @a-shilin in #838
- Single cell browser component by @a-shilin in #839
- prune matkp from master by @qu-y in #841
- Single cell browser component by @a-shilin in #842
- Updates for Vision Genomics by @dkjang in #843
- Radiant main by @hanzhang2021 in #844
- Dk byor update 01/2025 by @dkjang in #845
- Single cell browser component by @a-shilin in #846
- Factorization graphs by @moriondo2022 in #849
- Single cell browser component by @a-shilin in #851
- Dk byor update 01/2025 by @dkjang in #852
- Dk byor update 01/2025 by @dkjang in #854
- Dk region region plot by @dkjang in #862
- Code optimization in BYOR pre-filters util. by @dkjang in #870
- Dk byor update 02/2025 by @dkjang in #871
- Dk byor update 02/2025 by @dkjang in #872
- Dk region region plot by @dkjang in #874
- Single cell browser component by @a-shilin in #884
- Dk byor update 02/2025 by @dkjang in #885
- Dk byor update 02/2025 by @dkjang in #886
- Factor updates by @moriondo2022 in #888
- needs to clear graph data by @moriondo2022 in #889
- BYOR filter 'search' now works with array by array by @dkjang in #891
- need to clear out phenotype data by @moriondo2022 in #890
- Single cell browser component by @a-shilin in #892
- Dk byor update 03/2025 by @dkjang in #893
- Dk byor update 03/2025 by @dkjang in #898
- Single cell browser component by @a-shilin in #899
- Dk cfde master merge by @dkjang in #900
- Single cell browser component by @a-shilin in #901
- MultiRegionPlot in BYOR updated to take a config with no 'ld server' … by @dkjang in #902
- Lz embed by @moriondo2022 in #903
- Pigean genes track by @moriondo2022 in #904
- Single cell browser component by @a-shilin in #910
- Pigean sort fix by @moriondo2022 in #912
- DK vision genomics update 05 25 by @dkjang in #913
- scb updates pre-qa pre-cleanup. by @a-shilin in #930
- new scb branch by @a-shilin in #931
- -tmp markers fix, -add optional dataset select by @a-shilin in #938
- Tissue UI by @moriondo2022 in #939
- -new layout, -updated UMAP, -additional UMAP tool, toggle cell info by @a-shilin in #940
- add SCB component to tissue page by @a-shilin in #941
- moving download button into place by @moriondo2022 in #942
- adding cfde wheel option to byor header by @a-shilin in #950
- Revert "adding cfde wheel option to byor header" by @a-shilin in #951
- handle schema updates on for single-cell by @a-shilin in #952
- -scb page updates, -scb on tissue page: show cell abundance, show mar… by @a-shilin in #954
- Heatmap fix by @qu-y in #959
- adding support to single cell browser to handle loading datasets by p… by @a-shilin in #960
- Potential fix for code scanning alert no. 1: Insecure randomness by @qu-y in #961
Full Changelog: 11-03-2024...2025-11-13
Contributors
dkjang, qu-y, and 3 other contributors
Assets 2
November 2024 - ASHG
What's Changed
- Log scatterplot by @moriondo2022 in #689
- Dk byor update 7/2024 by @dkjang in #690
- both subtables on tissue page font size 14 by @moriondo2022 in #691
- Tissue plot fixes by @moriondo2022 in #692
- Dk byor update 7/2024 by @dkjang in #693
- Pigean factor by @moriondo2022 in #694
- Pigean fixes jul16 by @moriondo2022 in #695
- Phewas fixes by @moriondo2022 in #696
- Geneset combo button by @moriondo2022 in #697
- fixed the phewas plot rendering issue by @moriondo2022 in #698
- Inline phewas by @moriondo2022 in #700
- Pigean troubleshooting by @moriondo2022 in #701
- Phewas quick fix by @moriondo2022 in #702
- Subheaders by @moriondo2022 in #703
- Pigean plot fix by @moriondo2022 in #704
- in case mechanism is missing by @moriondo2022 in #705
- Pigean heatmap by @moriondo2022 in #706
- mechanism labels by @moriondo2022 in #707
- Heatmap component by @moriondo2022 in #709
- Ndkp variants by @hanzhang2021 in #708
- Heatmap adjustments by @moriondo2022 in #710
- Matkp UI updates by @a-shilin in #711
- Documentations by @moriondo2022 in #712
- Skin Diseases KP theme added by @dkjang in #714
- Mouse gene by @moriondo2022 in #713
- Mouse box-and-whisker plot by @moriondo2022 in #715
- small changes by @moriondo2022 in #716
- new tags by @qu-y in #718
- HugeScore for mouse browser by @moriondo2022 in #717
- Mice sort by @moriondo2022 in #719
- Common mouse by @moriondo2022 in #720
- Cs2ct tissue by @moriondo2022 in #721
- Matkp UI, datasets metadata updates integration by @a-shilin in #722
- Matkp UI - dataset metadata integration pt2 by @a-shilin in #723
- BYOR json to csv implemented by @dkjang in #725
- Dk json2csv by @dkjang in #726
- Credibleset fixes by @moriondo2022 in #724
- Multi region plot bug fix by @dkjang in #727
- Dk Vision Genomics bug fix by @dkjang in #728
- Dk cfde gene set browser by @dkjang in #730
- Cfde updates by @a-shilin in #731
- Cfde kc landing page by @a-shilin in #732
- colocus on gene pg by @qu-y in #734
- Bayes gene by @moriondo2022 in #733
- Cs2ct edits by @moriondo2022 in #735
- Research single search rebuild by @dkjang in #736
- Credible edits by @moriondo2022 in #737
- Bayes fixes by @moriondo2022 in #738
- Cfde kc updates by @a-shilin in #739
- Dk byor dynamic sub table by @dkjang in #740
- defer mouse data until later release by @qu-y in #741
- Dk cfde update by @dkjang in #742
- Dk cfde update by @dkjang in #743
- Dk cfde update by @dkjang in #744
- Dk cfde update by @dkjang in #745
- Geneset server by @moriondo2022 in #746
- Factors by @moriondo2022 in #747
- Dk cfde update by @dkjang in #748
- Cfde kc dge by @a-shilin in #749
- fixing double search-bar from merge by @a-shilin in #750
- Cfde data table by @dkjang in #751
- single search 'filter out' implemented by @dkjang in #752
- Cfde updates by @a-shilin in #753
- Dk single search filter by @dkjang in #754
- Dk single search filter by @dkjang in #755
- Cfde updates by @a-shilin in #756
- CFDE Single Search option added to BYOR page by @a-shilin in #757
- Dk subtable filter out by @dkjang in #758
- Cfde updates by @a-shilin in #760
- Factor subtable by @moriondo2022 in #759
- Cfde updates by @a-shilin in #761
- Cfde updates by @a-shilin in #762
- Mouse fixes by @moriondo2022 in #729
- Cfde updates by @a-shilin in #764
- Added p-values to geneset table by @moriondo2022 in #763
- Minor fixes by @a-shilin in #765
- Dk cfde update 1023 by @dkjang in #766
- DK vision genomics update by @dkjang in #767
- cfde landing tagline by @a-shilin in #768
- Dk cfde update 1023 by @dkjang in #769
- Dk cfde update 1023 by @dkjang in #770
- Dk cfde update 1023 by @dkjang in #771
- Dk new logo test by @dkjang in #772
- C2ct tissue by @moriondo2022 in #773
- Tissue fix by @moriondo2022 in #774
- updates by @qu-y in #775
- Cs fixes by @moriondo2022 in #776
- removed zscore by @moriondo2022 in #777
New Contributors
- @hanzhang2021 made their first contribution in #708
Full Changelog: 06-22-2024...11-03-2024
Contributors
dkjang, qu-y, and 3 other contributors
Assets 2
June 2024 - ADA
What's Changed
- calr scatter plot fixes by @dkjang in #626
- Merge branch 'master' into download-tsv by @qu-y in #627
- Chart download by @moriondo2022 in #630
- Vector plots download + MATKP Cell Browser by @dkjang in #631
- Matkp UI by @dkjang in #632
- Matkp UI by @dkjang in #633
- Matkp UI by @dkjang in #635
- Matkp UI by @dkjang in #636
- shows minimum 20 annotations by @moriondo2022 in #637
- Gene ontology by @moriondo2022 in #634
- C2ct by @moriondo2022 in #638
- Dk byor update 5/2024 by @dkjang in #639
- Pigean by @qu-y in #640
- phenotype top level charts by @moriondo2022 in #641
- Pigean recursive by @moriondo2022 in #642
- Pigean plots by @moriondo2022 in #643
- quick sort by combined by @moriondo2022 in #644
- Pigean plots by @moriondo2022 in #645
- Pigean edits by @moriondo2022 in #646
- Pigean geneset plot by @moriondo2022 in #647
- Pigean plot color by @moriondo2022 in #648
- Pigean geneset search by @moriondo2022 in #649
- Pigean prob by @moriondo2022 in #650
- Pigean minmax by @moriondo2022 in #651
- Uniprot fix by @qu-y in #652
- Dk byor update 5/2024 by @dkjang in #654
- Pigean filters by @moriondo2022 in #653
- Pigean search box by @qu-y in #656
- Pigean params by @moriondo2022 in #655
- Pigean phewas by @moriondo2022 in #657
- Pigean small fixes by @moriondo2022 in #658
- Pigean labels by @moriondo2022 in #659
- UI cleanup by @qu-y in #660
- Pigean plot fix by @moriondo2022 in #661
- Pigean overflow by @moriondo2022 in #662
- Expression fix by @moriondo2022 in #663
- Dk byor update 5/2024 by @dkjang in #664
- Scope fix by @moriondo2022 in #665
- Matkp UI by @a-shilin in #666
- Dk byor update 5/2024 by @dkjang in #667
- Dk byor update 5/2024 by @dkjang in #668
- Phenwas plot options fix across portal pages. by @dkjang in #669
- Revert "Phenwas plot options fix across portal pages." by @dkjang in #670
- Phenwas plot options fix across portal pages. by @dkjang in #671
- Single search on main pages by @moriondo2022 in #672
- Dk byor update 6/2024 by @dkjang in #673
- Dk byor update 6/2024 by @dkjang in #675
- Dk byor update 6/2024 by @dkjang in #677
- still overhangs plot by @moriondo2022 in #676
- Pheno updates by @qu-y in #678
- Dk byor update 6/2024 by @dkjang in #679
- b-table sort icons update by @a-shilin in #680
- added phenotype filter to correlation table by @moriondo2022 in #681
- b-table sort icons to right of label by @a-shilin in #682
- Dk byor update 6/2024 by @dkjang in #684
- Pheno cs2ct updates by @qu-y in #685
- Testing sort icon repositioning again by @a-shilin in #683
- Expression chart by @moriondo2022 in #686
- Exp scatterplot by @moriondo2022 in #687
- Plot filter updates by @qu-y in #688
New Contributors
Full Changelog: 04-09-2024...06-22-2024
Contributors
dkjang, qu-y, and 2 other contributors
Assets 2
April 2024
What's Changed
- Dk multi features byor by @dkjang in #555
- Dk multi features byor by @dkjang in #556
- Dk multi features byor by @dkjang in #557
- Dk multi features byor by @dkjang in #558
- Dk multi features byor by @dkjang in #559
- Research frontpage template by @dkjang in #560
- Dk multi features byor by @dkjang in #561
- Dk multi features byor by @dkjang in #562
- Dk multi features byor by @dkjang in #563
- Fixed the bar graph on the A2F portal front page by @dkjang in #564
- Update for the egl list on the gene page done. by @dkjang in #565
- Dk multi features byor by @dkjang in #566
- Dk multi features byor by @dkjang in #567
- Dk multi features byor by @dkjang in #568
- Dk multi features byor by @dkjang in #569
- Tissue page by @qu-y in #570
- Expression edit by @moriondo2022 in #574
- Dk vision kp by @dkjang in #575
- Tissue table by @moriondo2022 in #576
- just going to push this by @moriondo2022 in #577
- Table styling by @moriondo2022 in #578
- lupus update by @dkjang in #579
- patch for _/s in indexes by @qu-y in #581
- Phenotype multi plot by @moriondo2022 in #582
- Phenotype huge by @moriondo2022 in #583
- Dk byor update 2/2024 by @dkjang in #584
- Cfde demo candidate by @dkjang in #585
- Cfde demo candidate by @dkjang in #586
- Cfde demo candidate by @dkjang in #587
- Tissue links by @moriondo2022 in #588
- removed target='_blank' wherever i inserted it by @moriondo2022 in #589
- Cfde demo candidate by @dkjang in #590
- Cfde demo candidate by @dkjang in #591
- Tissue table fixes by @moriondo2022 in #592
- Cfde demo candidate by @dkjang in #593
- Cfde demo candidate by @dkjang in #594
- Cfde demo candidate by @dkjang in #595
- Cfde demo candidate by @dkjang in #596
- Cfde demo candidate by @dkjang in #597
- Sort tissue table by @moriondo2022 in #598
- Cfde demo candidate by @dkjang in #599
- Cfde demo candidate by @dkjang in #600
- Cfde demo candidate by @dkjang in #601
- Cfde demo candidate by @dkjang in #602
- Cfde demo candidate by @dkjang in #604
- Cfde demo candidate by @dkjang in #605
- Cfde demo candidate by @dkjang in #606
- Cfde demo candidate by @dkjang in #607
- Dk context config by @dkjang in #608
- Heritability by @moriondo2022 in #603
- Dk singlesearch tissue by @dkjang in #610
- Cfde demo candidate 2 by @dkjang in #611
- Tissue gene fixes by @moriondo2022 in #612
- Dk singlesearch tissue by @dkjang in #613
- Rare tab hotfix by @qu-y in #614
- Disease by @moriondo2022 in #615
- Filter tab by @moriondo2022 in #617
- Dk vision kp by @dkjang in #619
- Dataset highlight by @moriondo2022 in #618
- got rid of snake_format on labels. by @moriondo2022 in #620
- Front page layout by @qu-y in #621
- added pagination to global enrichment subtables by @moriondo2022 in #622
- Enrichment query by @moriondo2022 in #623
- Tissue menu by @qu-y in #624
- Dk april release candidate by @dkjang in #625
Full Changelog: 10-17-2023...04-09-2024
Contributors
dkjang, qu-y, and moriondo2022
Assets 2
2023
What's Changed
- Dk gene sifter update by @dkjang in #529
- Dk byor json data by @dkjang in #530
- Dk byor debug by @dkjang in #531
- Dk multi sections byor by @dkjang in #532
- Bug fixes by @dkjang in #533
- Dk multi features BYOR by @dkjang in #534
- Dk oct release portals by @dkjang in #536
- Dk multi features BYOR by @dkjang in #537
- DK: TAB UI implemented to the Multi-section BYOR by @dkjang in #538
- Search UI display none implemented to BYOR by @dkjang in #539
- small BYOR UI update by @dkjang in #540
- Dk multi features byor by @dkjang in #541
- Gene filters by @moriondo2022 in #535
- Dk multi features byor by @dkjang in #542
- Dk multi features byor by @dkjang in #543
- Dk multi features byor by @dkjang in #544
- Data Pre filter, Region extend implemented to Single-section BYOR by @dkjang in #545
- Dk multi features byor by @dkjang in #547
- Phenotype filters fix by @moriondo2022 in #546
- convert rsids to variant ids for variant queries by @sagehen03 in #549
- show the rsid on variant page https://broadinstitute.slack.com/archives/G1YMU27UN/p1697652942545939 by @sagehen03 in #550
- Avoid invalid locus error for rsid inputs with leading spaces by @sagehen03 in #551
- fix: no options shown after navigating to new portal and then clicking back by @sagehen03 in #552
- Gene pg biolink by @qu-y in #553
- PheWAS plots fixed on gene, region and variant pages. by @dkjang in #554
Full Changelog: 06-21-2023...12-21-2023
New Contributors
- @sagehen03 made their first contribution in #549
Contributors
sagehen03, dkjang, and 2 other contributors
Assets 2
ADA 2023
What's Changed
- config.byor.science replaced with hugeampkpncms.org. by @dkjang in #490
- Gene Expression plot bug fix by @dkjang in #491
- Dk new search by @dkjang in #492
- gene page warning message incase of alias by @dkjang in #493
- PEGL section of gene page bug fixed by @dkjang in #494
- Dk rp 0423 by @dkjang in #495
- Dk new gene finder2 by @dkjang in #496, #499, #500, #501, #503, #504, #506, #507, #508, #509, #512, #513, #515
- UI cleaned up by @dkjang in #497
- filtering logic updated by @dkjang in #498
- Associations remove bug fix in Gene Finder by @dkjang in #502
- update symbol search by @qu-y in #505
- More tooltips added to the headers by @dkjang in #510
- Download btn update by @qu-y in #511
- remove method filer by @qu-y in #514
- Data contributing community icons added to datasets page on A2FKP. by @dkjang in #517
- table now always linear by @moriondo2022 in #518
- DK-BYOR-search-autocomplete by @dkjang in #519, #520
- BYOR search UI updated by @dkjang in #521
- Transcript option in rare variant associations card on gene page by @dkjang in #523
- Dk byor update by @dkjang in #524, #525
- Gene Finder to Gene Sifter by @dkjang in #526
- Expression dots fix by @moriondo2022 in #522
- Fixes by @qu-y in #528
Full Changelog: 03-25-2023...06-21-2023
Contributors
dkjang, qu-y, and moriondo2022
Assets 2
Parliament
What's Changed
- Dk a2f merge master by @qu-y in #461
- Dk egl on phenotype page by @dkjang in #462
- EGL section on phenotype page update by @dkjang in #463
- Dk region gem section by @dkjang in #464
- Dk byor data convert update by @dkjang in #465
- Dk gene finder by @dkjang in #466
- Dk hugecal update by @dkjang in #467
- Dk hugecal update by @dkjang in #468
- EGL section added to gene page. by @dkjang in #469
- fixed a bug in PheWAS plot not taking negative numbers. by @dkjang in #470
- Dk lds filter vs by @dkjang in #471
- Dk lds filter vs by @dkjang in #472
- BYOR filter bug of not taking special characters in field names fixed by @dkjang in #473
- Dk rp 0323 by @dkjang in #474
- Byor rewrite by @qu-y in #475
- Violin multi by @moriondo2022 in #476
- Gene expression fixes by @moriondo2022 in #477
- Dk rp 0323 by @dkjang in #478
- New tooltips by @qu-y in #479
- Exp fixes 2 by @moriondo2022 in #480
- Dk rp 0323 by @dkjang in #481
- Exp fixes 3 by @moriondo2022 in #482
- Dk release styling by @dkjang in #483
- Exp fixes 4 by @moriondo2022 in #484
- Pheno sort order by @qu-y in #485
- Expression filters by @moriondo2022 in #486
- No data warning is added to BYOR by @dkjang in #487
- Collection filter implemented by @dkjang in #488
- 600k gene page by @qu-y in #489
Full Changelog: pre-a2f-merge...03-25-2023
Contributors
dkjang, qu-y, and moriondo2022
Assets 2
Pre-A2F Merge
Final version before merging new A2F changes. Use this as a base for community portals to minimize conflicts, if needed, before merging newer updates.
What's Changed
- BYOR rendering speed improve by @dkjang in #457
- Dk byor image quality improvement by @dkjang in #458
- Genes track updated by @dkjang in #459
- Score plot by @dkjang in #460
Full Changelog: 01-17-2023...pre-a2f-merge
Contributors
dkjang
Assets 2
Zenodo Release
A new tag for the release for Zenodo (not set to latest)
Year-end release
Contributors
dkjang and qu-y