Add a WDL to annotate any vcf #5145
RoriCremergatk-tests.yml
on: pull_request
check if the environment has privileges
0s
build and push gatk docker to artifacts
5h 16m
Validate script WDLs using womtools
44s
Validate generated WDLs using womtools
13m 27s
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Annotations
20 errors
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Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
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Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 build and test cloud
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 build and test cloud
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
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Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
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Java 17.0.6+10 test on docker unit
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
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Java 17.0.6+10 test on docker unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 test on docker conda
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
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Java 17.0.6+10 test on docker conda
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 test on docker variantcalling
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 test on docker variantcalling
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
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Java 17.0.6+10 test on docker integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 test on docker integration
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
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WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
The job running on runner GitHub Actions 309 has exceeded the maximum execution time of 360 minutes.
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WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
The operation was canceled.
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WDL test RUN_CNV_SOMATIC_WDL on cromwell
The job running on runner GitHub Actions 297 has exceeded the maximum execution time of 360 minutes.
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WDL test RUN_CNV_SOMATIC_WDL on cromwell
The operation was canceled.
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WDL test RUN_CNN_WDL on cromwell
The job running on runner GitHub Actions 220 has exceeded the maximum execution time of 360 minutes.
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WDL test RUN_CNN_WDL on cromwell
The operation was canceled.
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Artifacts
Produced during runtime
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gatkDockerImage
Expired
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2.24 GB |
sha256:f81e6e4b43ec8c1fee2780253ea59c2687cbc9c21de7ad29a9c1abf06219f0ed
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test-results-17.0.6+10-cloud
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95.3 KB |
sha256:b34cab8ee7f6e559ee95bd55ac39b258fa41e22dc4a23d61007e3c3b6af95c3b
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test-results-17.0.6+10-integration
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566 KB |
sha256:d05c164b621b515ac88d874b50867435bac4a2e0bab39700f3308e0a04d30f9e
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test-results-17.0.6+10-unit
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12 MB |
sha256:699da96d0827c1f735465a4a2bfe605c8967b71b1fe3cb0dc9ff2773f056e47c
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test-results-docker-17.0.6+10-conda
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sha256:9e0461e961fe349a22810f33f2349bdf0956bb6615a4a9f5feec7ec63e980473
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test-results-docker-17.0.6+10-integration
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568 KB |
sha256:cfea0794e332ceba7a71bba6872051ed3ba551645710334529482d158054cb94
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test-results-docker-17.0.6+10-unit
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11.9 MB |
sha256:807c10bcc6e50e2585dec126d73230b92c0efdf8098388637f43d6113703cf90
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test-results-docker-17.0.6+10-variantcalling
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31.4 KB |
sha256:fcb0c242b091e6d04558fb1802c441a698e27273048d79e5b2ed03f4ae1a197b
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