Build and Test GATK 4

Bump com.nimbusds:nimbus-jose-jwt from 9.41.2 to 10.0.2 #5620

Sign in to view logs

Triggered via pull request July 11, 2025 17:13

dependabot[bot]

opened #9223

dependabot/gradle/com.nimbusds-nimbus-jose-jwt-10.0.2

Status Success

Total duration 43m 35s

Artifacts 7

gatk-tests.yml

on: pull_request

check if the environment has privileges

build and push gatk docker to artifacts

Validate script WDLs using womtools

Validate generated WDLs using womtools

Matrix: wdlTests

Matrix: test

Matrix: testOnDocker

Annotations

6 warnings

cloud build and test Java 17.0.6+10

No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.

WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_M2_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_CNV_SOMATIC_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

Artifacts

Produced during runtime

Name	Size	Digest
gatkDockerImage Expired	2.21 GB	`sha256:ade7ce0c6ae16ba14aeb820e52fbd8fda88a961417f93a25bd8defe5155cbed7`
test-results-17.0.6+10-integration Expired	581 KB	`sha256:76fe672f7da08af4261c63f7b922bbf9a42469f3c59765d157d041fe6b6fe829`
test-results-17.0.6+10-unit Expired	5.06 MB	`sha256:06422ab16097284b3e7b86ae2837ce50381f852f5ba5032d28bbe4006e213e4a`
test-results-docker-17.0.6+10-conda Expired	53.1 KB	`sha256:cd56589e38dd83c1c69e9eea6a596cd842ea42ac6b255af3c8140b345349a9c7`
test-results-docker-17.0.6+10-integration Expired	584 KB	`sha256:163850b44d07dfce11250aa178e4152dbbc70654f2fc79ad9e1bb98140a1b804`
test-results-docker-17.0.6+10-unit Expired	4.92 MB	`sha256:f2182677c6d1db2eae8bb5dbcd95d0a78437d8e8d9863c84fead053401465c58`
test-results-docker-17.0.6+10-variantcalling Expired	31.9 KB	`sha256:92bbd69793485ca1f3dbbd4c2a26cf801bd0e4dca3075accf01cb36505bd1093`