Bump org.apache.commons:commons-lang3 from 3.14.0 to 3.18.0 #5621
dependabot[bot]gatk-tests.yml
on: pull_request
check if the environment has privileges
1s
build and push gatk docker to artifacts
2m 4s
Validate script WDLs using womtools
1m 19s
Validate generated WDLs using womtools
1m 32s
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Annotations
10 errors and 3 warnings
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Validate generated WDLs using womtools
Process completed with exit code 1.
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cloud build and test Java 17.0.6+10
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unit build and test Java 17.0.6+10
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integration build and test Java 17.0.6+10
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build and push gatk docker to artifacts
buildx failed with: ERROR: failed to build: failed to solve: process "/bin/sh -c ls . && rm /etc/apt/sources.list.d/google-cloud-sdk.list && apt update && apt-key list && curl https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key --keyring /usr/share/keyrings/cloud.google.gpg add - && add-apt-repository universe && apt update && apt-get --assume-yes install git-lfs && apt-get -y clean && apt-get -y autoclean && apt-get -y autoremove && rm -rf /var/lib/apt/lists/* && git lfs install --force && git lfs pull --include src/main/resources/large && export GRADLE_OPTS=\"-Xmx4048m -Dorg.gradle.daemon=false\" && /gatk/gradlew clean collectBundleIntoDir shadowTestClassJar shadowTestJar -Drelease=$RELEASE && cp -r $( find /gatk/build -name \"*bundle-files-collected\" )/ /gatk/unzippedJar/ && unzip -o -j $( find /gatk/unzippedJar -name \"gatkPython*.zip\" ) -d /gatk/unzippedJar/scripts && chmod -R a+rw /gatk/unzippedJar" did not complete successfully: exit code: 1
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WDL test RUN_CNV_SOMATIC_WDL on cromwell
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WDL test RUN_M2_WDL on cromwell
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WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
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WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
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WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
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cloud build and test Java 17.0.6+10
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
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unit build and test Java 17.0.6+10
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
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integration build and test Java 17.0.6+10
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
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