BQSR: restore ability to specify custom covariates and to disable standard covariates. (Take 2) #5663
takutosatogatk-tests.yml
on: pull_request
check if the environment has privileges
2s
build and push gatk docker to artifacts
12m 37s
Validate script WDLs using womtools
1m 7s
Validate generated WDLs using womtools
14m 14s
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Annotations
7 errors
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cloud build and test Java 17.0.6+10
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unit build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
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integration build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
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conda test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
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variantcalling test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
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integration test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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unit test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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gatkDockerImage
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2.29 GB |
sha256:48bdbafca42f6291dc9dc381811cbe23b6daddf90d5661a887935da89be62abb
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test-results-17.0.6+10-cloud
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82.1 KB |
sha256:0b0de0c7be5aa657d2f49a403483164f3c986979340951f4d72e9f872c11c0d1
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test-results-17.0.6+10-integration
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582 KB |
sha256:6bdb573b5733f9076897cef08bbaeaef65ebf17e704cca101ed7e4a1d8792926
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test-results-17.0.6+10-unit
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5.06 MB |
sha256:37db6c190b516c6a53c29b9231c6f32b5e924bdf59c42b54cd727393df249447
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test-results-docker-17.0.6+10-conda
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53.1 KB |
sha256:bab041f49b6f0b011d57ddf7b84b64f5584f34c4fe0d47e393e1673ab653898e
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test-results-docker-17.0.6+10-integration
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584 KB |
sha256:3bb30fbc3a536dd0890a2a431559e5e9a90cf99e4064fe5be36fec4772f0d2eb
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test-results-docker-17.0.6+10-unit
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4.93 MB |
sha256:a7960d7729ac630646855ffee2d70b1cc6586e4b2efd206ecb865f73af5eec1d
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test-results-docker-17.0.6+10-variantcalling
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31.8 KB |
sha256:10ea72330096fd1c1cbfc23ba418e8bfddb8745744ee28265bfae57129c8f91c
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