WDL to create the participant mapping table [VS-1632] #5883
mcovarrgatk-tests.yml
on: pull_request
check if the environment has privileges
3s
build and push gatk docker to artifacts
13m 7s
Validate script WDLs using womtools
3m 50s
Validate generated WDLs using womtools
15m 58s
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Annotations
7 errors and 5 warnings
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cloud build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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unit build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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integration build and test Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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unit test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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conda test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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variantcalling test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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integration test on docker Java 17.0.6+10
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_M2_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNV_SOMATIC_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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gatkDockerImage
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2.29 GB |
sha256:356d571e868c8cbc9e1d0a78c04f83dad8917968de7c3c652b6be85972669625
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test-results-17.0.6+10-cloud
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86.9 KB |
sha256:4b240522d8d9da96077aec63684a27063b4677669f4b8dc7a4f80de627f3a160
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test-results-17.0.6+10-integration
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577 KB |
sha256:71691672a504935f2a82ca7c09e38d89fb6aab4ef6f28846e71bffb1e91f3aa2
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test-results-17.0.6+10-unit
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5.15 MB |
sha256:238ef8b0c47eecba86225912e7accf94c91de68c9f725899c46017e03b92331b
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test-results-docker-17.0.6+10-conda
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59.5 KB |
sha256:dbcd845b5d1514f8c2b0d1b581e959729d0faec5c790339b8f16a85aa4373091
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test-results-docker-17.0.6+10-integration
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580 KB |
sha256:2a4a8fc22e78b24439c2b1560d6abc2b2f33adab8f1cae48b3d2d3da06cc3188
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test-results-docker-17.0.6+10-unit
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5.01 MB |
sha256:8cce97364db86938fe961b12cc3996f0fa84455e9d28931ff5ee443de126f010
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test-results-docker-17.0.6+10-variantcalling
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31.7 KB |
sha256:eceb54c3ee3a99133a5c42f221f2891b7007c226a7bf2701c61dddcf2ad65d20
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