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broadinstitute / gatk Public

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Bundle support for FeatureInputs, references; add CreateBundle tool.#8944

Draft

cmnbroad wants to merge 9 commits intomasterbroadinstitute/gatk:masterfrom

cn_vcf_bundlesbroadinstitute/gatk:cn_vcf_bundlesCopy head branch name to clipboard

Conversation Commits9 (9)Checks Files changed

Draft

Bundle support for FeatureInputs, references; add CreateBundle tool.#8944
cmnbroad wants to merge 9 commits intomasterfrom
cn_vcf_bundles

Commits

Commits on Jun 9, 2025

Add bundle support for FeatureInputs.
cmnbroad
committed
Add bundle support for references.
cmnbroad
committed
FIx up javadoc.
cmnbroad
committed
More text cleanup.
cmnbroad
committed
Use a temporary htsjdk snapshot until a release is ready.
cmnbroad
committed
Update comment.
cmnbroad
committed
Fix regression in testDuplicateSources test.
cmnbroad
committed
Include missing expected results file for SV testBundleRemoteWithQueryParams test.
cmnbroad
committed
Awkwardly skip reference bundle tests in Spark tools; circumvent dependency injection issue in tests.
cmnbroad
committed

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