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lbergelson
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gatk-bot commented May 19, 2025

Github actions tests reported job failures from actions build 15120705234
Failures in the following jobs:

Test Type JDK Job ID Logs
unit 17.0.6+10 15120705234.12 logs
integration 17.0.6+10 15120705234.11 logs
unit 17.0.6+10 15120705234.1 logs
integration 17.0.6+10 15120705234.0 logs

@lbergelson
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Hmn. It looks like FastaSequenceIndexCreator makes use of the no-args constructor and now fasta's created with it explode.

@lbergelson
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I think the lastSequence cache has to be kept up to date with changes. It's causing failures in GATK because fasta indexes are built dynamically starting from the empty constructors.

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