Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add WDL script for normalizing VCF files by removing HAPCOMP and HAPDOM fields" #470

Draft
wants to merge 5 commits into
base: main
Choose a base branch
from
Draft

Add WDL script for normalizing VCF files by removing HAPCOMP and HAPDOM fields" #470

wants to merge 5 commits into from

Conversation

shadizaheri
Copy link
Collaborator

  • Created NormalizeVCF.wdl to automate the process of normalizing VCF files.
  • The workflow removes problematic INFO fields (HAPCOMP and HAPDOM) and normalizes the VCF.
  • Included tasks for removing HAPCOMP, removing HAPDOM, and normalizing VCF using bcftools.
  • Outputs the normalized VCF to be used in Terra data tables.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
1 participant
@shadizaheri