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Multiple Error (?) Messages when building with gradle

Status: Open.

#2015 In broadinstitute/picard;

· schlaepferp opened on Jun 3, 2025

CollectRawWgsMetrics runs much slower on non-Apple chip machine

Status: Open.

#2013 In broadinstitute/picard;

· CNHAustin opened on May 30, 2025

ValidateSamFile Exception counting mismatches on read with * in seq column

Status: Open.

#2011 In broadinstitute/picard;

· tobsecret opened on May 21, 2025

Target_interval VS Bait_interval

Status: Open.

#2008 In broadinstitute/picard;

· Aimar269 opened on Apr 17, 2025

MarkDuplicates documentation

Status: Open.

#2007 In broadinstitute/picard;

· adthrasher opened on Apr 16, 2025

No optical clusters detected with single end reads

Status: Open.

#2004 In broadinstitute/picard;

· caterinar opened on Mar 27, 2025

CreateVerifyIDIntensityContaminationMetricsFile should handle scientific notation

Status: Open.

#2001 In broadinstitute/picard;

· kachulis opened on Mar 6, 2025

Merging of previously sorted BAM files

Status: Open.

#1990 In broadinstitute/picard;

· fgvieira opened on Jan 29, 2025

<code>FOLD_80_BASE_PENALTY</code> Metric from <code>TargetMetricsCollector</code> does not exclude 0 coverage regions.

Status: Open.

#1971 In broadinstitute/picard;

· Patrick-Schlaeger-Broad opened on Jul 30, 2024

Can CollectWgsMetrics fall back to slow algorithm gracefully if the fast one fails with the default read length?

Status: Open.

#1970 In broadinstitute/picard;

· gokalpcelik opened on Jul 8, 2024

ValidateSamFile wrong NM tag computation

Status: Open.

#1963 In broadinstitute/picard;

· albertocasagrande opened on May 29, 2024

<code>--USE_END_IN_UNPAIRED_READS</code> and <code>--USE_UNPAIRED_CLIPPED_END</code> options for <code>picard MarkDuplicates</code> have no effect

Status: Open.

#1959 In broadinstitute/picard;

· ChrisHIV opened on Apr 16, 2024