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improve startup logic #4467

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improve startup logic #4467

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5 changes: 3 additions & 2 deletions deploy/docker/seqr/entrypoint.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -39,8 +39,9 @@ do
fi
done

# init and populate seqrdb unless it already exists
if ! psql --host "$POSTGRES_SERVICE_HOSTNAME" -U "$POSTGRES_USERNAME" -l | grep seqrdb; then
# init and populate seqrdb & reference_data_db unless there exists a row
# in the last table updated by the reference data update.
if ! psql --host "$POSTGRES_SERVICE_HOSTNAME" -U "$POSTGRES_USERNAME" -d reference_data_db -tc 'select exists(select * from reference_data_humanphenotypeontology)' | grep 't'; then
psql --host "$POSTGRES_SERVICE_HOSTNAME" -U "$POSTGRES_USERNAME" -c 'CREATE DATABASE reference_data_db';
psql --host "$POSTGRES_SERVICE_HOSTNAME" -U "$POSTGRES_USERNAME" -c 'CREATE DATABASE seqrdb';
python -u manage.py migrate
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