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Permutation test yields significant p-values for random gene sets when using a weighted score

#45

· gregpoore opened

on Aug 6, 2025

Division by Zero in ssGSEA2.0.R(Lines 453-455) for sum.correl.u = 0

#42

· rela-v opened

on Jun 13, 2025

object 'm' not found

#39

· ruzy99 opened

on Apr 2, 2025

combine.mode = "combine.add"

#38

· Maj18 opened

on Mar 29, 2025

Help with Error in parse_args (Using GenePattern for PTM-SEA)

#37

· orbi1234 opened

on Mar 5, 2025

Number of cores in ssgsea-cli.R is hardcoded but should be set using command line arguments

#33

· sstein93 opened

on Jul 15, 2024

ssGSEA2 error in HPC environments when available cores is not equal to total number of cores.

#32

· cwlkr opened

on Jun 13, 2024

Error in ssGSEA2(input.ds = opt$input.ds, output.prefix = opt$output.prefix, : object 'm' not found

#31

· cindysimm opened

on May 29, 2024

How do I perform ssGSEA on single cell RNA seq data when it has already been preprocessed in Seurat version v5?

#29

· Saumya513 opened

on Dec 26, 2023

Optimal Gene Filtering for TPM Expression Data in RNA-seq Analysis: Impact of Non-Protein Coding Biotypes on Hallmark Enrichment Analysis

#28

· snijesh opened

on Nov 29, 2023