Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

In align_and_count, change default to count only properly-paired reads #534

Open
wants to merge 2 commits into
base: master
Choose a base branch
from
Open

In align_and_count, change default to count only properly-paired reads #534

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
a451199
In align_and_count, change default to count only properly-paired reads
tomkinsc Apr 24, 2024
4f074b4
Merge branch 'master' into ct-align_and_count-filter-to-proper-by-def…
tomkinsc Jun 4, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion pipes/WDL/tasks/tasks_reports.wdl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -392,7 +392,7 @@ task align_and_count {
File ref_db
Int topNHits = 3

Boolean filter_bam_to_proper_primary_mapped_reads = false
Boolean filter_bam_to_proper_primary_mapped_reads = true
Boolean do_not_require_proper_mapped_pairs_when_filtering = false
Boolean keep_singletons_when_filtering = false
Boolean keep_duplicates_when_filtering = false
Expand Down
Loading