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hg38 versions of gnomad and PON

Status: Open.

#31 In bsmn/bsmn-pipeline;

· gevro opened on Jul 26, 2023

AWS Parallelcluster 3 support

Status: Open.

#30 In bsmn/bsmn-pipeline;

· genomax opened on Jun 5, 2023

I'm fairly certain the GATK3 download link install_tools uses is broken

Status: Open.

#27 In bsmn/bsmn-pipeline;

· DCGenomics opened on Jun 18, 2020

what is $PU?

question

Status: Open.

#21 In bsmn/bsmn-pipeline;

· kdaily opened on Mar 28, 2019

test existing pipeline implementation

Status: Open.

#19 In bsmn/bsmn-pipeline;

· kdaily opened on Jan 16, 2019

document how to generate sample list file

Status: Open.

#5 In bsmn/bsmn-pipeline;

· kdaily opened on Aug 22, 2018

 ·  

Get current pipeline to work for another user

implement without dependency on SGE

Status: Open.

#4 In bsmn/bsmn-pipeline;

· kdaily opened on Aug 22, 2018

 ·  

Migrate pipeline to CWL