Add `extraPackages` to each hook and propagate them to `enabledPackages` #1020

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Run time

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Job	Run time
tests (ubuntu-latest)	2m 5s
tests (macos-latest)	6m 1s
tests-flakes (ubuntu-latest)	3m 54s
tests-flakes (macos-latest)	9m 19s
	21m 19s