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Mitochodrial reads filtered by cellranger atac?

Status: Open.

#102 In caleblareau/mgatk;

· tkiehl opened on Jul 1, 2025

Missing version git tag

Status: Open.

#101 In caleblareau/mgatk;

· Hellseher opened on Apr 19, 2025

Improper folder specification; file missing / extra file present. See documentation Calls: importMito -> checkGrep. Execution halted

Status: Open.

#100 In caleblareau/mgatk;

· Srishtyaku19 opened on Feb 4, 2025

Config file (snake.scatter.yaml) not present

Status: Open.

#94 In caleblareau/mgatk;

· tybottorff opened on May 31, 2024

Error in checkGrep(grep(".A.txt", files)) and Attribute error in 'pulp'

bug

Status: Open.

#93 In caleblareau/mgatk;

· davhg96 opened on May 23, 2024

Improper folder specification; file missing / extra file present. See documentation

Status: Open.

#90 In caleblareau/mgatk;

· isadeghi87 opened on Mar 20, 2024

sumstatsBP_overlap.py failed to handle paired-end reads with unmatched length in the overlapped region.

Status: Open.

#86 In caleblareau/mgatk;

· Qirong-Lin opened on Jan 16, 2024

sumstatsBP_overlap.py failed to handle paired-end reads with unequal R1 and R2 lengths

Status: Open.

#85 In caleblareau/mgatk;

· Qirong-Lin opened on Jan 16, 2024

missing output files

Status: Open.

#70 In caleblareau/mgatk;

· WeiWei060512 opened on May 28, 2023

mgatk tenx mode missing depth and sparse_matrices files

bug

Status: Open.

#63 In caleblareau/mgatk;

· triciapark opened on Jul 21, 2022

Error about Missing output files

bug

Status: Open.

#61 In caleblareau/mgatk;

· ttab963 opened on Jul 7, 2022